Alzheimer&#39;s disease secretase, app substrates therefor, and uses therefor

ABSTRACT

The present invention provides the enzyme and enzymatic procedures for cleaving the β secretase cleavage site of the APP protein and associated nucleic acids, peptides, vectors, cells and cell isolates and assays. The invention further provides a modified APP protein and associated nucleic acids, peptides, vectors, cells, and cell isolates, and assays that are particularly useful for identifying candidate therapeutics for treatment or prevention of Alzheimer&#39;s disease.

[0001] The present application is a continuation of U.S. applicationSer. No. 09/416,901, filed Oct. 13, 1999 which claims priority benefitof U.S. Provisional Patent Application No. 60/155,493, filed Sep. 23,1999. The present application also claims priority benefit as acontinuation-in-part of U.S. patent application Ser. No. 09/404,133 andPCT/US99/20881, both filed Sep. 23, 1999, both of which in turn claimpriority benefit of U.S. Provisional Patent Application No. 60/101,594,filed Sep. 24, 1998. All of these priority applications are herebyincorporated by reference in their entirety.

FIELD OF THE INVENTION

[0002] The present invention relates to Alzheimer's Disease, amyloidprotein precursor, amyloid beta peptide, and human aspartyl proteases,as well as a method for the identification of agents that modulate theactivity of these polypeptides and thereby are candidates to modulatethe progression of Alzheimer's disease.

BACKGROUND OF THE INVENTION

[0003] Alzheimer's disease (AD) causes progressive dementia withconsequent formation of amyloid plaques, neurofibrillary tangles,gliosis and neuronal loss. The disease occurs in both genetic andsporadic forms whose clinical course and pathological features are quitesimilar. Three genes have been discovered to date which, when mutated,cause an autosomal dominant form of Alzheimer's disease. These encodethe amyloid protein precursor (APP) and two related proteins,presenilin-1 (PS1) and presenilin-2 (PS2), which, as their namessuggest, are structurally and functionally related. Mutations in any ofthe three proteins have been observed to enhance proteolytic processingof APP via an intracellular pathway that produces amyloid beta peptide(Aβ peptide, or sometimes here as Abeta), a 40-42 amino acid longpeptide that is the primary component of amyloid plaque in AD.

[0004] Dysregulation of intracellular pathways for proteolyticprocessing may be central to the pathophysiology of AD. In the case ofplaque formation, mutations in APP, PS 1 or PS2 consistently alter theproteolytic processing of APP so as to enhance formation of Aβ 1-42, aform of the Aβ peptide which seems to be particularly amyloidogenic, andthus very important in AD. Different forms of APP range in size from695-770 amino acids, localize to the cell surface, and have a singleC-terminal transmembrane domain. Examples of specific isotypes of APPwhich are currently known to exist in humans are the 695-amino acidpolypeptide described by Kang et. al. (1987), Nature 325: 733-736 whichis designated as the “normal” APP; the 751 amino acid polypeptidedescribed by Ponte et al. (1988), Nature 331: 525-527 (1988) and Tanziet al. (1988), Nature 331: 528-530; and the 770 amino acid polypeptidedescribed by Kitaguchi et. al. (1988), Nature 331: 530-532. The Abetapeptide is derived from a region of APP adjacent to and containing aportion of the transmembrane domain. Normally, processing of APP at theα-secretase site cleaves the midregion of the Aβ sequence adjacent tothe membrane and releases the soluble, extracellular domain of APP fromthe cell surface. This α-secretase APP processing creates soluble APP-α,which is normal and not thought to contribute to AD. Pathologicalprocessing of APP at the β- and γ-secretase sites, which are locatedN-terminal and C-terminal to the α-secretase site, respectively,produces a very different result than processing at the a site.Sequential processing at the β- and γ-secretase sites releases the Aβpeptide, a peptide possibly very important in AD pathogenesis.Processing at the β- and γ-secretase sites can occur in both theendoplasmic reticulum (in neurons) and in the endosomal/lysosomalpathway after reinternalization of cell surface APP (in all cells).Despite intense efforts, for 10 years or more, to identify the enzymesresponsible for processing APP at the β and γ sites, to produce the Aβpeptide, those proteases remained unknown until this disclosure.

SUMMARY OF THE INVENTION

[0005] Here, for the first time, we report the identification andcharacterization of the β secretase enzyme, termed Aspartyl Protease 2(Asp2). We disclose some known and some novel human aspartic proteasesthat can act as β-secretase proteases and, for the first time, weexplain the role these proteases have in AD. We describe regions in theproteases critical for their unique function and for the first timecharacterize their substrate. This is the first description of expressedisolated purified active protein of this type, assays that use theprotein, in addition to the identification and creation of useful celllines and inhibitors.

[0006] Here we disclose a number of variants of the Asp2 gene andpeptide.

[0007] In one aspect, the invention provides any isolated or purifiednucleic acid polynucleotide that codes for a protease capable ofcleaving the beta (β) secretase cleavage site of APP that contains twoor more sets of special nucleic acids, where the special nucleic acidsare separated by nucleic acids that code for about 100 to 300 amino acidpositions, where the amino acids in those positions may be any aminoacids, where the first set of special nucleic acids consists of thenucleic acids that code for the peptide DTG, where the first nucleicacid of the first special set of nucleic acids is the first specialnucleic acid, and where the second set of nucleic acids code for eitherthe peptide DSG or DTG, where the last nucleic acid of the second set ofnucleic acids is the last special nucleic acid, with the proviso thatthe nucleic acids disclosed in SEQ ID NO: 1 and SEQ ID NO: 3 are notincluded. In a preferred embodiment, the two sets of special nucleicacids are separated by nucleic acids that code for about 125 to 222amino acid positions, which may be any amino acids. In a highlypreferred embodiment, the two sets of special nucleic acids areseparated by nucleic acids that code for about 150 to 196, or 150-190,or 150 to 172 amino acid positions, which may be any amino acids. In aparticular preferred embodiment, the two sets are separated by nucleicacids that code for about 172 amino acid positions, which may be anyamino acids. An exemplary nucleic acid polynucleotide comprises the acidnucleotide sequence in SEQ ID NO: 5. In another particular preferredembodiment, the two sets are separated by nucleic acids that code forabout 196 amino acids. An exemplary polynucleotide comprises thenucleotide sequence in SEQ ID NO: 5. In another particular embodiment,the two sets of nucleotides are separated by nucleic acids that code forabout 190 amino acids. An exemplary polynucleotide comprises thenucleotide sequence in SEQ ID NO: 1. Preferably, the first nucleic acidof the first special set of amino acids, that is, the first specialnucleic acid, is operably linked to any codon where the nucleic acids ofthat codon codes for any peptide comprising from 1 to 10,000 amino acid(positions). In one variation, the first special nucleic acid isoperably linked to nucleic acid polymers that code for any peptideselected from the group consisting of: any reporter proteins or proteinswhich facilitate purification. For example, the first special nucleicacid is operably linked to nucleic acid polymers that code for anypeptide selected from the group consisting of: immunoglobin-heavy chain,maltose binding protein, glutathione S transferase, Green Fluorescentprotein, and ubiquitin. In another variation, the last nucleic acid ofthe second set of special amino acids, that is, the last special nucleicacid, is operably linked to nucleic acid polymers that code for anypeptide comprising any amino acids from 1 to 10,000 amino acids. Instill another variation, the last special nucleic acid is operablylinked to nucleic acid polymers that code for any peptide selected fromthe group consisting of: any reporter proteins or proteins whichfacilitate purification. For example, the last special nucleic acid isoperably linked to nucleic acid polymers that code for any peptideselected from the group consisting of: immunoglobin-heavy chain, maltosebinding protein, glutathione S transferase, Green Fluorescent protein,and ubiquitin.

[0008] In a related aspect, the invention provides any isolated orpurified nucleic acid polynucleotide that codes for a protease capableof cleaving the beta secretase cleavage site of APP that contains two ormore sets of special nucleic acids, where the special nucleic acids areseparated by nucleic acids that code for about 100 to 300 amino acidpositions, where the amino acids in those positions may be any aminoacids, where the first set of special nucleic acids consists of thenucleic acids that code for DTG, where the first nucleic acid of thefirst special set of nucleic acids is the first special nucleic acid,and where the second set of nucleic acids code for either DSG or DTG,where the last nucleic acid of the second set of special nucleic acidsis the last special nucleic acid, where the first special nucleic acidis operably linked to nucleic acids that code for any number of aminoacids from zero to 81 amino acids and where each of those codons maycode for any amino acid. In a preferred embodiment, the first specialnucleic acid is operably linked to nucleic acids that code for anynumber of from 64 to 77 amino acids where each codon may code for anyamino acid. In a particular embodiment, the first special nucleic acidis operably linked to nucleic acids that code for 71 amino acids. Forexample, the first special nucleic acid is operably linked to 71 aminoacids and where the first of those 71 amino acids is the amino acid T.In a preferred embodiment, the polynucleotide comprises a sequence thatis at least 95% identical to a human Asp1 or Asp2 sequence as taughtherein. In another preferred embodiment, the first special nucleic acidis operably linked to nucleic acids that code for any number of from 30to 54 amino acids, or 35 to 47 amino acids, or 40 to 54 amino acidswhere each codon may code for any amino acid. In a particularembodiment, the first special nucleic acid is operably linked to nucleicacids that code for 47 amino acids. For example, the first specialnucleic acid is operably linked to 47 codons where the first those 47amino acids is the amino acid E.

[0009] In another related aspect, the invention provides for anyisolated or purified nucleic acid polynucleotide that codes for aprotease capable of cleaving the beta (β) secretase cleavage site of APPand that contains two or more sets of special nucleic acids, where thespecial nucleic acids are separated by nucleic acids that code for about100 to 300 amino acid positions, where the amino acids in thosepositions may be any amino acids, where the first set of special nucleicacids consists of the nucleic acids that code for the peptide DTG, wherethe first nucleic acid of the first special set of amino acids is, thefirst special nucleic acid, and where the second set of special nucleicacids code for either the peptide DSG or DTG, where the last nucleicacid of the second set of special nucleic acids, the last specialnucleic acid, is operably linked to nucleic acids that code for anynumber of codons from 50 to 170 codons. In a preferred embodiment, thelast special nucleic acid is operably linked to nucleic acids comprisingfrom 100 to 170 codons. In a highly preferred embodiment, the lastspecial nucleic acid is operably linked to nucleic acids comprising from142 to 163 codons. In a particular embodiment, the last special nucleicacid is operably linked to nucleic acids comprising about 142 codons, orabout 163 codons, or about 170 codons. In a highly preferred embodiment,the polynucleotide comprises a sequence that is at least 95% identicalto aspartyl-protease encoding sequences taught herein. In one variation,the second set of special nucleic acids code for the peptide DSG. Inanother variation, the first set of nucleic acid polynucleotide isoperably linked to a peptide purification tag. For example, the nucleicacid polynucleotide is operably linked to a peptide purification tagwhich is six histidine. In still another variation, the first set ofspecial nucleic acids are on one polynucleotide and the second set ofspecial nucleic acids are on a second polynucleotide, where both firstand second polynucleotides have at lease 50 codons. In one embodiment ofthis type, both of the polynucleotides are in the same solution. In arelated aspect, the invention provides a vector which contains apolynucleotide as described above, or a cell or cell line which istransformed or transfected with a polynucleotide as described above orwith a vector containing such a polynucleotide.

[0010] In still another aspect, the invention provides an isolated orpurified peptide or protein comprising an amino acid polymer that is aprotease capable of cleaving the beta (β) secretase cleavage site of APPthat contains two or more sets of special amino acids, where the specialamino acids are separated by about 100 to 300 amino acid positions,where each amino acid position can be any amino acid, where the firstset of special amino acids consists of the peptide DTG, where the firstamino acid of the first special set of amino acids is, the first specialamino acid, where the second set of amino acids is selected from thepeptide comprising either DSG or DTG, where the last amino acid of thesecond set of special amino acids is the last special amino acid, withthe proviso that the proteases disclosed in SEQ ID NO: 2 and SEQ ID NO:4 are not included. In preferred embodiments, the two sets of aminoacids are separated by about 125 to 222 amino acid positions or about150 to 196 amino acids, or about 150-190 amino acids, or about 150 to172 amino acids, where in each position it may be any amino acid. In aparticular embodiment, the two sets of amino acids are separated byabout 172 amino acids. For example, the protease has the amino acidsequence described in SEQ ID NO 6. In another particular embodiment, thetwo sets of amino acids are separated by about 196 amino acids. Forexample, the two sets of amino acids are separated by the same aminoacid sequences that separate the same set of special amino acids in SEQID NO 4. In another particular embodiment, the two sets of nucleotidesare separated by about 190 amino acids. For example, the two sets ofnucleotides are separated by the same amino acid sequences that separatethe same set of special amino acids in SEQ ID NO 2. In one embodiment,the first amino acid of the first special set of amino acids, that is,the first special amino acid, is operably linked to any peptidecomprising from 1 to 10,000 amino acids. In another embodiment, thefirst special amino acid is operably linked to any peptide selected fromthe group consisting of: any reporter proteins or proteins whichfacilitate purification. In particular embodiments, the first specialamino acid is operably linked to any peptide selected from the groupconsisting of: immunoglobin-heavy chain, maltose binding protein,glutathione S transferase, Green Fluorescent protein, and ubiquitin. Instill another variation, the last amino acid of the second set ofspecial amino acids, that is, the last special amino acid, is operablylinked to any peptide comprising any amino acids from 1 to 10,000 aminoacids. By way of nonlimiting example, the last special amino acid isoperably linked any peptide selected from the group consisting of anyreporter proteins or proteins which facilitate purification. Inparticular embodiments, the last special amino acid is operably linkedto any peptide selected from the group consisting of: immunoglobin-heavychain, maltose binding protein, glutathione S transferase, GreenFluorescent protein, and ubiquitin.

[0011] In a related aspect, the invention provides any isolated orpurified peptide or protein comprising an amino acid polypeptide thatcodes for a protease capable of cleaving the beta secretase cleavagesite of APP that contains two or more sets of special amino acids, wherethe special amino acids are separated by about 100 to 300 amino acidpositions, where each amino acid in each position can be any amino acid,where the first set of special amino acids consists of the amino acidsDTG, where the first amino acid of the first special set of amino acidsis, the first special amino acid, D, and where the second set of aminoacids is either DSG or DTG, where the last amino acid of the second setof special amino acids is the last special amino acid, G, where thefirst special amino acid is operably linked to amino acids that code forany number of amino acids from zero to 81 amino acid positions where ineach position it may be any amino acid. In a preferred embodiment, thefirst special amino acid is operably linked to a peptide from about30-77 or about 64 to 77 amino acids positions where each amino acidposition may be any amino acid. In a particular embodiment, the firstspecial amino acid is operably linked to a peptide 35, 47, 71, or 77amino acids. In a very particular embodiment, the first special aminoacid is operably linked to 71 amino acids and the first of those 71amino acids is the amino acid T. For example, the polypeptide comprisesa sequence that is at least 95% identical to an aspartyl proteasesequence as described herein. In another embodiment, the first specialamino acid is operably linked to any number of from 40 to 54 amino acids(positions) where each amino acid position may be any amino acid. In aparticular embodiment, the first special amino acid is operably linkedto amino acids that code for a peptide of 47 amino acids. In a veryparticular embodiment, the first special amino acid is operably linkedto a 47 amino acid peptide where the first those 47 amino acids is theamino acid E. In another particular embodiment, the first special aminoacid is operably linked to the same corresponding peptides from SEQ IDNO: 3 that are 35, 47, 71, or 77 peptides in length, beginning countingwith the amino acids on the first special sequence, DTG, towards theN-terminal of SEQ ID NO: 3. In another particular embodiment, thepolypeptide comprises a sequence that is at least 95% identical to thesame corresponding amino acids in SEQ ID NO: 4, that is, identical tothat portion of the sequences in SEQ ID NO: 4, including all thesequences from both the first and or the second special nucleic acids,toward the—terminal, through and including 71, 47, 35 amino acids beforethe first special amino acids. For example, the complete polypeptidecomprises the peptide of 71 amino acids, where the first of the aminoacid is T and the second is Q.

[0012] In still another related aspect, the invention provides anyisolated or purified amino acid polypeptide that is a protease capableof cleaving the beta (β) secretase cleavage site of APP that containstwo or more sets of special amino acids, where the special amino acidsare separated by about 100 to 300 amino acid positions, where each aminoacid in each position can be any amino acid, where the first set ofspecial amino acids consists of the amino acids that code for DTG, wherethe first amino acid of the first special set of amino acids is, thefirst special amino acid, D, and where the second set of amino acids areeither DSG or DTG, where the last amino acid of the second set ofspecial amino acids is the last special amino acid, G, which is operablylinked to any number of amino acids from 50 to 170 amino acids, whichmay be any amino acids. In preferred embodiments, the last special aminoacid is operably linked to a peptide of about 100 to 170 amino acids orabout 142-163 amino acids. In particular embodiments, the last specialamino acid is operably linked to a peptide of about 142 amino acids, orabout 163 amino acids, or about 170 amino acids. For example, thepolypeptide comprises a sequence that is at least 95% identical (andpreferably 100% identical) to an aspartyl protease sequence as describedherein. In one particular embodiment, the second set of special aminoacids is comprised of the peptide with the amino acid sequence DSG.Optionally, the amino acid polypeptide is operably linked to a peptidepurification tag, such as purification tag which is six histidine. Inone variation, the first set of special amino acids are on onepolypeptide and the second set of special amino acids are on a secondpolypeptide, where both first and second polypeptide have at lease 50amino acids, which may be any amino acids. In one embodiment of thistype, both of the polypeptides are in the same vessel. The inventionfurther includes a process of making any of the polynucleotides,vectors, or cells described herein; and a process of making any of thepolypeptides described herein.

[0013] In yet another related aspect, the invention provides a purifiedpolynucleotide comprising a nucleotide sequence that encodes apolypeptide having aspartyl protease activity, wherein the polypeptidehas an amino acid sequence characterized by: (a) a first tripeptidesequence DTG; (b) a second tripeptide sequence selected from the groupconsisting of DSG and DTG; and (c) about 100 to 300 amino acidsseparating the first and second tripeptide sequences, wherein thepolypeptide cleaves the beta secretase cleavage site of amyloid proteinprecursor. In one embodiment, the polypeptide comprises an amino acidsequence depicted in SEQ ID NO: 2 or 4, whereas in another embodiment,the polypeptide comprises an amino acid sequence other than the aminoacid sequences set forth in SEQ ID NOS: 2 and 4. Similarly, theinvention provides a purified polynucleotide comprising a nucleotidesequence that encodes a polypeptide that cleaves the beta secretasecleavage site of amyloid protein precursor; wherein the polynucleotideincludes a strand that hybridizes to one or more of SEQ ID NOS: 3, 5,and 7 under the following hybridization conditions: hybridizationovernight at 42° C. for 2.5 hours in 6×SSC/0.1% SDS, followed by washingin 1.0×SSC at 65° C., 0.1% SDS. In one embodiment, the polypeptidecomprises an amino acid sequence depicted in SEQ ID NO: 2 or 4, whereasin another embodiment, the polypeptide comprises an amino acid sequenceother than the amino acid sequences set forth in SEQ ID NOS: 2 and 4.Likewise, the invention provides a purified polypeptide having aspartylprotease activity, wherein the polypeptide is encoded by polynucleotidesas described in the preceding sentences. The invention also provides avector or host cell comprising such polynucleotides, and a method ofmaking the polypeptides using the vectors or host cells to recombinantlyexpress the polypeptide.

[0014] In yet another aspect, the invention provides an isolated nucleicacid molecule comprising a polynucleotide, said polynucleotide encodinga Hu-Asp polypeptide and having a nucleotide sequence at least 95%identical to a sequence selected from the group consisting of:

[0015] (a) a nucleotide sequence encoding a Hu-Asp polypeptide selectedfrom the group consisting of Hu-Asp1, Hu-Asp2(a), and Hu-Asp2(b),wherein said Hu-Asp1, Hu-Asp2(a) and Hu-Asp2(b) polypeptides have thecomplete amino acid sequence of SEQ ID NO: 2, SEQ ID NO: 4, and SEQ IDNO: 6, respectively; and

[0016] (b) a nucleotide sequence complementary to the nucleotidesequence of (a).

[0017] Several species are particularly contemplated. For example, theinvention provides a nucleic acid molecule wherein said Hu-Asppolypeptide is Hu-Asp1, and said polynucleotide molecule of (a)comprises the nucleotide sequence of SEQ ID NO: 1; and a nucleic acidmolecule wherein said Hu-Asp polypeptide is Hu-Asp2(a), and saidpolynucleotide molecule of (a) comprises the nucleotide sequence of SEQID NO: 3; and a nucleic acid molecule wherein said Hu-Asp polypeptide isHu-Asp2(b), and said polynucleotide molecule of (a) comprises thenucleotide sequence of SEQ ID NO: 5. In addition to the foregoing, theinvention provides an isolated nucleic acid molecule comprising apolynucleotide which hybridizes under stringent conditions to apolynucleotide having the nucleotide sequence in (a) or (b) as describedabove.

[0018] Additionally, the invention provides a vector comprising anucleic acid molecule as described in the preceding paragraph. In apreferred embodiment, the nucleic acid molecule is operably linked to apromoter for the expression of a Hu-Asp polypeptide. Individual vectorswhich encode Hu-Asp1, and Hu-Asp2(a), and Hu-Asp2(b) are allcontemplated. Likewise, the invention contemplates a host cellcomprising any of the foregoing vectors, as well as a method ofobtaining a Hu-Asp polypeptide comprising culturing such a host cell andisolating the Hu-Asp polypeptide. Host cells of the invention includebacterial cells, such as E. coli, and eukaryotic cells. Among theeukaryotic cells that are contemplated are insect cells, such as sf9 orHigh 5 cells; and mammalian cells, such as human, rodent, lagomorph, andprimate. Preferred human cells include HEK293, and IMR-32 cells. Otherpreferred mammalian cells include COS-7, CHO-K1, Neuro-2A, and 3T3cells. Also among the eukaryotic cells that are contemplated are a yeastcell and an avian cell.

[0019] In a related aspect, the invention provides an isolated Hu-Asp 1polypeptide comprising an amino acid sequence at least 95% identical toa sequence comprising the amino acid sequence of SEQ ID NO: 2. Theinvention also provides an isolated Hu-Asp2(a) polypeptide comprising anamino acid sequence at least 95% identical to a sequence comprising theamino acid sequence of SEQ ID NO: 4. The invention also provides anisolated Hu-Asp2(a) polypeptide comprising an amino acid sequence atleast 95% identical to a sequence comprising the amino acid sequence ofSEQ ID NO: 8.

[0020] In still another aspect, the invention provides an isolatedantibody that binds specifically to any Hu-Asp polypeptide describedherein, especially the polypeptide described in the precedingparagraphs.

[0021] The invention also provides several assays involving aspartylprotease enzymes of the invention. For example, the invention provides

[0022] a method to identify a cell that can be used to screen forinhibitors of β secretase activity comprising:

[0023] (a) identifying a cell that expresses a protease capable ofcleaving APP at the β secretase site, comprising:

[0024] i) collect the cells or the supernatant from the cells to beidentified

[0025] ii) measure the production of a critical peptide, where thecritical peptide is selected from the group consisting of either the APPC-terminal peptide or soluble APP,

[0026] iii) select the cells which produce the critical peptide.

[0027] In one variation, the cells are collected and the criticalpeptide is the APP C-terminal peptide created as a result of the βsecretase cleavage. In another variation, the supernatant is collectedand the critical peptide is soluble APP, where the soluble APP has aC-terminus created by β secretase cleavage. In preferred embodiments,the cells contain any of the nucleic acids or polypeptides describedabove and the cells are shown to cleave the βsecretase site of anypeptide having the following peptide structure, P2, P1, P1′, P2′ (SEQ IDNO: 74), where P2 is K or N, where P1 is M or L, where P1′ is D, whereP2′ is A. In one embodiment P2 is K and P1 is M and in anotherembodiment P2 is N and P1 is L.

[0028] In still another aspect, the invention provides novel isoforms ofamyloid protein precursor (APP) where the last two carboxy terminusamino acids of that isoform are both lysine residues. In this context,the term “isoform” is defined as any APP polypeptide, including APPvariants (including mutations), and APP fragments that exists in humans,such as those described in U.S. Pat. No. 5,766,846, col 7, lines 45-67,incorporated into this document by reference, modified as describedherein by the inclusion of two C-terminal lysine residues. For example,the invention provides a polypeptide comprising the isoform known asAPP695, modified to include two lysine residues as its last two carboxyterminus amino acids. An exemplary polypeptide comprises the amino acidsequence set forth in SEQ ID NO: 16. The invention further includes APPisoform variants as set forth in SEQ ID NOS: 18 and 20. The inventionfurther includes all polynucleotides that encode an APP protein that hasbeen modified to include two C-terminal lysines; as well has anyeukaryotic cell line comprising such nucleic acids or polypeptides.Preferred cell lines include a mammalian cell line (e.g., HEK293,Neuro2a).

[0029] Thus, in one embodiment, the invention provides a polypeptidecomprising the amino acid sequence of a mammalian amyloid proteinprecursor (APP) or fragment thereof containing an APP cleavage siterecognizable by a mammalian β-secretase, and further comprising twolysine residues at the carboxyl terminus of the amino acid sequence ofthe mammalian APP or APP fragment. As taught herein in detail, theaddition of two additional lysine residues to APP sequences has beenfound to greatly increase Aβ processing of the APP in APP processingassays. Thus, the di-lysine modified APP reagents of the invention areparticularly useful in assays to identify modulators of Aβ production,for use in designing therapeutics for the treatment or prevention ofAlzheimer's disease. In one embodiment, the polypeptide comprises thecomplete amino acid sequence of a mammalian amyloid protein precursor(APP), and further comprises the two lysine residues at the carboxylterminus of the amino acid sequence of the mammalian amyloid proteinprecursor. In an alternative embodiment, the polypeptide comprises onlya fragment of the APP, the fragment containing at least that portion ofAPP that is cleaved by a mammalian β-secretase in the formation of Aβpeptides.

[0030] The practice of assays that monitor cleavage of APP can befacilitated by attaching a marker to a portion of the APP. Measurment ofretained or liberated marker can be used to quantitate the amount of APPcleavage that occurs in the assay, e.g., in the presence or absence of aputative modulator of cleavage activity. Thus, in one preferredembodiment, the polypeptide of the invention further includes a marker.For example, the marker comprises a reporter protein amino acid sequenceattached to the APP amino acid sequence. Exemplary reporter proteinsinclude a fluorescing protein (e.g., green fluorescing proteins,luciferase) or an enzyme that is used to cleave a substrate to produce acolorimetric cleavage product. Also contemplated are tag sequences whichare commonly used as epitopes for quantitative immunoassays.

[0031] In a preferred embodiment, the di-lysine-modified APP of theinvention is a human APP. For example, human APP isoforms such asAPP695, APP751, and APP770, modified to include the two lysines, arecontemplated. In a preferred embodiment, the APP isoform comprises atleast one variation selected from the group consisting of a SwedishKM→NL mutation and a London V717→F mutation, or any other mutation thathas been observed in a subpopulation that is particularly prone todevelopment of Alzheimer's disease. These mutations are recognized asmutations that influence APP processing into AβP. In a highly preferredembodiment, the APP protein or fragment thereof comprises the APP-Swβ-secretase peptide sequence NLDA (SEQ ID NO: 66), which is associatedwith increased levels of Aβ processing and therefore is particularlyuseful in assays relating to Alzheimer's research. More particularly,the APP protein or fragment thereof preferably comprises the APP-Swβ-secretase peptide sequence SEVNLDAEFR (SEQ ID NO: 63).

[0032] In one preferred embodiment, the APP protein or fragment thereoffurther includes an APP transmembrane domain carboxy-terminal to theAPP-Sw β-secretase peptide sequence. Polypeptides that include the TMdomain are particularly useful in cell-based APP processing assays. Incontrast, embodiments lacking the TM domain are useful in cell-freeassays of APP processing.

[0033] In addition to working with APP from humans and various animalmodels, researchers in the field of Alzheimer's also have constructchimeric APP polypeptides which include stretches of amino acids fromAPP of one species (e.g., humans) fused to streches of APP from one ormore other species (e.g., rodent). Thus, in another embodiment of thepolypeptide of the invention, the APP protein or fragment thereofcomprises a chimeric APP, the chimeric APP including partial APP aminoacid sequences from at least two species. A chimeric APP that includesamino acid sequence of a human APP and a rodent APP is particularlycontemplated.

[0034] In a related aspect, the invention provides a polynucleotidecomprising a nucleotide sequence that encodes a polypeptide as describedin the preceding paragraphs. Such a polynucleotide is useful forrecominant expression of the polypeptide of the invention for use in APPprocessing assays. In addition, the polynucleotide is useful fortransforming into cells to produce recombinant cells that express thepolypeptide of the invention, which cells are useful in cell-basedassays to identify modulators of APP processing. Thus, in addition topolynucleotides, the invention provides a vector comprising suchpolynucleotides, especially expression vectors where the polynucleotideis operably linked to a promoter to promote expression of thepolypeptide encoded by the polynucleotide in a host cell. The inventionfurther provides a host cell transformed or transfected with apolynucleotide according to claim 14 or a vector according to claim 15or 16. Among the preferred host cells are mammalian cells, especiallyhuman cells.

[0035] In another, related embodiment, the invention provides apolypeptide useful for assaying for modulators of β-secretase activity,said polypeptide comprising an amino acid sequence of the formulaNH₂—X—Y-Z-KK—COOH; wherein X, Y, and Z each comprise an amino acidsequence of at least one amino acid; wherein-NH₂—X comprises anamino-terminal amino acid sequence having at least one amino acidresidue; wherein Y comprises an amino acid sequence of a β-secretaserecognition site of a mammalian amyloid protein precursor (APP); andwherein Z-KK—COOH comprises a carboxy-terminal amino acid sequenceending in two lysine (K) residues. In one preferred variation, thecarboxyl-terminal amino acid sequence Z includes a hyrdrophobic domainthat is a transmembrane domain in host cells that express thepolypeptide. Host cells that express such a polypeptide are particularlyuseful in assays described herein for identifying modulators of APPprocessing. In another preferred variation, the amino-terminal aminoacid sequence X includes an amino acid sequence of a reporter or markerprotein, as described above. In still another preferred variation, theβ-secretase recognition site Y comprises the human APP-Sw β-secretasepeptide sequence NLDA (SEQ ID NO: 66). It will be apparent that thesepreferred variations are not mutually exclusive of each other—they maybe combined in a single polypeptide. The invention further provides apolynucleotide comprising a nucleotide sequence that encodes suchpolypeptides, vectors which comprise such polynucleotides, and hostcells which comprises such vectors, polynucleotides, and/orpolypeptides.

[0036] In yet another aspect, the invention provides a method foridentifying inhibitors of an enzyme that cleaves the beta secretasecleavable site of APP comprising:

[0037] a) culturing cells in a culture medium under conditions in whichthe enzyme causes processing of APP and release of amyloid beta-peptideinto the medium and causes the accumulation of CTF99 fragments of APP incell lysates,

[0038] b) exposing the cultured cells to a test compound; andspecifically determining whether the test compound inhibits the functionof the enzyme by measuring the amount of amyloid beta-peptide releasedinto the medium and/or the amount of CTF99 fragments of APP in celllysates;

[0039] c) identifying test compounds diminishing the amount of solubleamyloid beta peptide present in the culture medium and diminution ofCTF99 fragments of APP in cell lysates as Asp2 inhibitors. In preferredembodiments, the cultured cells are a human, rodent or insect cell line.It is also preferred that the human or rodent cell line exhibits βsecretase activity in which processing of APP occurs with release ofamyloid beta-peptide into the culture medium and accumulation of CTF99in cell lysates. Among the contemplated test compounds are antisenseoligomers directed against the enzyme that exhibits βsecretase activity,which oligomers reduce release of soluble amyloid beta-peptide into theculture medium and accumulation of CTF99 in cell lysates.

[0040] In yet another aspect, the invention provides a method for theidentification of an agent that decreases the activity of a Hu-Asppolypeptide selected from the group consisting of Hu-Asp1, Hu-Asp2(a),and Hu-Asp2(b), the method comprising:

[0041] a) determining the activity of said Hu-Asp polypeptide in thepresence of a test agent and in the absence of a test agent; and

[0042] b) comparing the activity of said Hu-Asp polypeptide determinedin the presence of said test agent to the activity of said Hu-Asppolypeptide determined in the absence of said test agent; whereby alower level of activity in the presence of said test agent than in theabsence of said test agent indicates that said test agent has decreasedthe activity of said Hu-Asp polypeptide.

[0043] In a related aspect, the invention provides a method for assayingfor modulators of β-secretase activity, comprising the steps of:

[0044] (a) contacting a first composition with a second composition bothin the presence and in the absence of a putative modulator compound,wherein the first composition comprises a mammalian β-secretasepolypeptide or biologically active fragment thereof, and wherein thesecond composition comprises a substrate polypeptide having an aminoacid sequence comprising a β-secretase cleavage site; (b) measuringcleavage of the substrate polypeptide in the presence and in the absenceof the putative modulator compound; and (c) identifying modulators ofβ-secretase activity from a difference in cleavage in the presenceversus in the absence of the putative modulator compound. A modulatorthat is a β-secretase antagonist (inhibitor) reduces such cleavage,whereas a modulator that is a β-secretase agonist increases suchcleavage. Since such assays are relevant to development of Alzheimer'sdisease therapeutics for humans, it will be readily apparent that, inone preferred embodiment, the first composition comprises a purifiedhuman Asp2 polypeptide. In one variation, the first compositioncomprises a soluble fragment of a human Asp2 polypeptide that retainsAsp2 β-secretase activity. Several such fragments (including ΔTMfragments) are described herein in detail. Thus, in a particularembodiment, the soluble fragment is a fragment lacking an Asp2transmembrane domain.

[0045] The β-secretase cleavage site in APP is known, and it will beappreciated that the oassays of the invention can be performed witheither intact APP or fragments or analogs of APP that retain theβ-secretase recognition and cleavage site. Thus, in one variation, thesubstrate polypeptide of the second composition comprises the amino acidsequence SEVNLDAEFR (SEQ ID NO: 63), which includes the β-secretaserecognition site of human APP that contains the “Swiss” mutation. Inanother variation, the substrate polypeptide of the second compositioncomprises the amino acid sequence EVKMDAEF (SEQ ID NO: 67). In anothervariation, the second composition comprises a polypeptide having anamino acid sequence of a human amyloid precursor protein (APP). Forexample, the human amyloid precursor protein is selected from the groupconsisting of: APP695, APP751, and APP770. Preferably, the human amyloidprecursor protein (irrespective of isoform selected) includes at leaston mutation selected from a KM→NL Swiss mutation and a V→F Londonmutation. As explained elsewhere, one preferred embodiment involves avariation wherein the polypeptide having an amino acid sequence of ahuman APP further comprises an amino acid sequence comprising a markersequence attached amino-terminal to the amino acid sequence of the humanamyloid precursor protein. Preferably, the polypeptide having an aminoacid sequence of a human APP further comprises two lysine residuesattached to the carboxyl terminus of the amino acid sequence of thehuman APP. The assays can be performed in a cell free setting, usingcell-free enzyme and cell-free substrate, or can be performed in acell-based assay wherein the second composition comprises a eukaryoticcell that expresses amyloid precursor protein (APP) or a fragmentthereof containing a β-secretase cleavage site. Preferably, the APPexpressed by the host cell is an APP variant that includes twocarboxyl-terminal lysine residues. It will also be appreciated that theβ-secretase enzyme can be an enzyme that is expressed on the surface ofthe same cells.

[0046] The present invention provides isolated nucleic acid moleculescomprising a polynucleotide that codes for a polypeptide selected fromthe group consisting of human aspartyl proteases. In particular, humanaspartyl protease 1 (Hu-Asp1) and two alternative splice variants ofhuman aspartyl protease-2 (Hu-Asp2), a “long” (L) form designated hereinas Hu-Asp2(a) and a “short” (S) form designated Hu-Asp2(b). As usedherein, all references to “Hu-Asp” should be understood to refer to allof Hu-Asp 1, Hu-Asp2(a), and Hu-Asp2(b). In addition, as used herein,all references to “Hu-Asp2” should be understood to refer to bothHu-Asp2(a) and Hu-Asp2(b). Hu-Asp1 is expressed most abundantly inpancreas and prostate tissues, while Hu-Asp2(a) and Hu-Asp2(b) areexpressed most abundantly in pancreas and brain tissues. The inventionalso provides isolated Hu-Asp1, Hu-Asp2(a), and Hu-Asp2(b) polypeptides,as well as fragments thereof which exhibit aspartyl protease activity.

[0047] In a preferred embodiment, the nucleic acid molecules comprise apolynucleotide having a nucleotide sequence selected from the groupconsisting of residues 1-1554 of SEQ ID NO: 1, encoding Hu-Asp1,residues 1-1503 of SEQ ID NO: 3, encoding Hu-Asp2(a), and residues1-1428 of SEQ ID NO: 5, encoding Hu-Asp2(b). In another aspect, theinvention provides an isolated nucleic acid molecule comprising apolynucleotide which hybridizes under stringent conditions to apolynucleotide encoding Hu-Asp1, Hu-Asp2(a), Hu-Asp-2(b), or fragmentsthereof.

[0048] European patent application EP 0 848 062 discloses a polypeptidereferred to as “Asp 1,” that bears substantial homology to Hu-Asp1,while international application WO 98/22597 discloses a polypeptidereferred to as “Asp 2,” that bears substantial homology to Hu-Asp2(a).

[0049] The present invention also provides vectors comprising theisolated nucleic acid molecules of the invention, host cells into whichsuch vectors have been introduced, and recombinant methods of obtaininga Hu-Asp1, Hu-Asp2(a), or Hu-Asp2(b) polypeptide comprising culturingthe above-described host cell and isolating the relevant polypeptide.

[0050] In another aspect, the invention provides isolated Hu-Asp1,Hu-Asp2(a), and Hu-Asp2(b) polypeptides, as well as fragments thereof.In a preferred embodiment, the Hu-Asp1, Hu-Asp2(a), and Hu-Asp2(b)polypeptides have the amino acid sequence given in SEQ ID NO: 2, SEQ IDNO: 4, or SEQ ID NO: 6, respectively. The present invention alsodescribes active forms of Hu-Asp2, methods for preparing such activeforms, methods for preparing soluble forms, methods for measuringHu-Asp2 activity, and substrates for Hu-Asp2 cleavage. The inventionalso describes antisense oligomers targeting the Hu-Asp 1, Hu-Asp2(a)and Hu-Asp2(b) mRNA transcripts and the use of such antisense reagentsto decrease such mRNA and consequently the production of thecorresponding polypeptide. Isolated antibodies, both polyclonal andmonoclonal, that binds specifically to any of the Hu-Asp1, Hu-Asp2(a),and Hu-Asp2(b) polypeptides of the invention are also provided.

[0051] The invention also provides a method for the identification of anagent that modulates the activity of any of Hu-Asp-1, Hu-Asp2(a), andHu-Asp2(b). The inventions describes methods to test such agents incell-free assays to which Hu-Asp2 polypeptide is added, as well asmethods to test such agents in human or other mammalian cells in whichHu-Asp2 is present.

[0052] Additional features and variations of the invention will beapparent to those skilled in the art from the entirety of thisapplication, including the drawing and detailed description, and allsuch features are intended as aspects of the invention. Likewise,features of the invention described herein can be re-combined intoadditional embodiments that are also intended as aspects of theinvention, irrespective of whether the combination of features isspecifically mentioned above as an aspect or embodiment of theinvention. Also, only such limitations which are described herein ascritical to the invention should be viewed as such; variations of theinvention lacking limitations which have not been described herein ascritical are intended as aspects of the invention.

[0053] In addition to the foregoing, the invention includes, as anadditional aspect, all embodiments of the invention narrower in scope inany way than the variations specifically mentioned above. Although theapplicant(s) invented the full scope of the claims appended hereto, theclaims appended hereto are not intended to encompass within their scopethe prior art work of others. Therefore, in the event that statutoryprior art within the scope of a claim is brought to the attention of theapplicants by a Patent Office or other entity or individual, theapplicant(s) reserve the right to exercise amendment rights underapplicable patent laws to redefine the subject matter of such a claim tospecifically exclude such statutory prior art or obvious variations ofstatutory prior art from the scope of such a claim. Variations of theinvention defined by such amended claims also are intended as aspects ofthe invention.

BRIEF DESCRIPTION OF THE SEQUENCE LISTING

[0054] Sequence ID NO: 1: Human Asp-1, nucleotide sequence.

[0055] Sequence ID NO: 2: Human Asp-1, predicted amino acid sequence.

[0056] Sequence ID NO: 3: Human Asp-2(a), nucleotide sequence.

[0057] Sequence ID NO: 4: Human Asp-2(a), predicted amino acid sequence.The Asp2(a) amino acid sequence includes a putative signal peptidecomprising residues 1 to 21; and a putative pre-propeptide after thesignal peptide that extends through residue 45 (as assessed byprocessing observed of recombinant Asp2(a) in CHO cells), and a putativepropeptide that may extend to at least about residue 57, based on theobservation of an observed GRR↓GS (SEQ ID NO: 68) sequence which hascharacteristics of a protease recognition sequence. The Asp2(a) furtherincludes a transmembrane domain comprising residues 455-477, acytoplasmic domain comprising residues 478-501, and a putativealpha-helical spacer region, comprising residues 420-454, believed to beunnecessary for proteolytic activity, between the protease catalyticdomain and the transmembrane domain.

[0058] Sequence ID NO: 5: Human Asp-2(b), nucleotide sequence.

[0059] Sequence ID NO: 6: Human Asp-2(b), predicted amino acid sequence.The Asp2(b) amino acid sequence includes a putative signal peptide,pre-propeptide, and propeptide as described above for Asp2(a). TheAsp2(b) further includes a transmembrane domain comprising residues430-452, a cytoplasmic domain comprising residues 453-476, and aputative alpha-helical spacer region, comprising residues 395-429,believed to be unnecessary for proteolytic activity, between theprotease catalytic domain and the transmembrane domain.

[0060] Sequence ID NO: 7: Murine Asp-2(a), nucleotide sequence.

[0061] Sequence ID NO: 8: Murine Asp-2(a), predicted amino acidsequence. The proteolytic processing of murine Asp2(a) is believed to beanalogous to the processing described above for human Asp2(a). Inaddition, a variant lacking amino acid residues 190-214 of SEQ ID NO: 8is specifically contemplated as a murine Asp2(b) polypeptide.

[0062] Sequence ID NO: 9: Human APP695, nucleotide sequence.

[0063] Sequence ID NO: 10: Human APP695, predicted amino acid sequence.

[0064] Sequence ID NO: 11: Human APP695-Sw, nucleotide sequence.

[0065] Sequence ID NO: 12: Human APP695-Sw. predicted amino acidsequence. In the APP695 isoform, the Sw mutation is characterized by aKM→NL alteration at positions 595-596 (compared to normal APP695).

[0066] Sequence ID NO: 13: Human APP695-VF, nucleotide sequence.

[0067] Sequence ID NO: 14: Human APP695-VF, predicted amino acidsequence. In the APP 695 isoform, the VF mutation is characterized by aV→F alteration at position 642 (compared to normal APP 695).

[0068] Sequence ID NO: 15: Human APP695-KK, nucleotide sequence.

[0069] Sequence ID NO: 16: Human APP695-KK, predicted amino acidsequence. (APP695 with two carboxy-terminal lysine residues.)

[0070] Sequence ID NO: 17: Human APP695-Sw-KK, nucleotide sequence.

[0071] Sequence ID NO: 18: Human APP695-Sw-KK, predicted amino acidsequence

[0072] Sequence ID NO: 19: Human APP695-VF-KK, nucleotide sequence

[0073] Sequence ID NO: 20: Human APP695-VF-KK, predicted amino acidsequence

[0074] Sequence ID NO: 21: T7-Human-pro-Asp-2(a)ΔTM, nucleotide sequence

[0075] Sequence ID NO: 22: T7-Human-pro-Asp-2(a)ΔTM, amino acid sequence

[0076] Sequence ID NO: 23: T7-Caspase-Human-pro-Asp-2(a)ΔTM, nucleotidesequence

[0077] Sequence ID NO: 24: T7-Caspase-Human-pro-Asp-2(a)ΔTM, amino acidsequence

[0078] Sequence ID NO: 25: Human-pro-Asp-2(a)ΔTM (low GC), nucleotidesequence

[0079] Sequence ID NO: 26: Human-pro-Asp-2(a)ΔTM, (low GC), amino acidsequence

[0080] Sequence ID NO: 27: T7-Caspase-Caspase 8cleavage-Human-pro-Asp-2(a)ΔTM, nucleotide sequence

[0081] Sequence ID NO: 28: T7-Caspase-Caspase 8cleavage-Human-pro-Asp-2(a)ΔTM, amino acid sequence

[0082] Sequence ID NO: 29: Human Asp-2(a)ΔTM, nucleotide sequence

[0083] Sequence ID NO: 30: Human Asp-2(a)ΔTM, amino acid sequence

[0084] Sequence ID NO: 31: Human Asp-2(a)ΔTM(His)₆, nucleotide sequence

[0085] Sequence ID NO: 32: Human Asp-2(a)ΔTM(His)₆, amino acid sequence

[0086] Sequence ID NOS: 33-49 are short synthetic peptide andoligonucleotide sequences that are described below in the DetailedDescription of the Invention.

[0087] Sequence ID NO: 50: Human Asp2(b)ΔTM polynucleotide sequence.

[0088] Sequence ID NO: 51: Human Asp2(b)ΔTM polypeptide sequence(exemplary variant of Human Asp2(b) lacking transmembrane andintracellular domains of Hu-Asp2(b) set forth in SEQ ID NO: 6.

[0089] Sequence ID NO: 52: Human Asp2(b)ΔTM(His)₆ polynucleotidesequence.

[0090] Sequence ID NO: 53: Human Asp2(b)ΔTM(His)₆ polypeptide sequence(Human Asp2(b)ΔTM with six histidine tag attached to C-terminus).

[0091] Sequence ID NO: 54: Human APP770-encoding polynucleotidesequence.

[0092] Sequence ID NO: 55: Human APP770 polypeptide sequence. Tointroduce the KM→NL Swedish mutation, residues KM at positions 670-71are changed to NL. To introduce the V→F London mutation, the V residueat position 717 is changed to F.

[0093] Sequence ID NO: 56: Human APP751 encoding polynucleotidesequence.

[0094] Sequence ID NO: 57: Human APP751 polypeptide sequence (HumanAPP751 isoform).

[0095] Sequence ID NO: 58: Human APP770-KK encoding polynucleotidesequence.

[0096] Sequence ID NO: 59: Human APP770-KK polypeptide sequence. (HumanAPP770 isoform to which two C-terminal lysines have been added).

[0097] Sequence ID NO: 60: Human APP751-KK encoding polynucleotidesequence.

[0098] Sequence ID NO: 61: Human APP751-KK polypeptide sequence (HumanAPP751 isoform to which two C-terminal lysines have been added).

[0099] Sequence ID NOS: 62-65: Various short peptide sequences describedin detail in detailed description.

BRIEF DESCRIPTION OF THE FIGURES

[0100] FIGS. 1A-1B: FIGS. 1A-1B show the nucleotide (SEQ ID NO: 1) andpredicted amino acid sequence (SEQ ID NO: 2) of human Asp1.

[0101] FIGS. 2A-2B: FIGS. 2A-2B show the nucleotide (SEQ ID NO: 5) andpredicted amino acid sequence (SEQ ID NO: 6) of human Asp2(b).

[0102] FIGS. 3A-3B: FIGS. 3A-3B shows the nucleotide (SEQ ID NO: 3) andpredicted amino acid sequence (SEQ ID NO: 4) of human Asp2(a).

[0103]FIG. 4: FIG. 4 shows the nucleotide (SEQ ID NO: 7) and predictedamino acid sequence (SEQ ID NO: 8) of murine Asp2(a)

[0104]FIG. 5: FIG. 5 shows the BestFit alignment of the predicted aminoacid sequences of Hu-Asp2(a) (SEQ ID NO: 4) and murine Asp2(a) (SEQ IDNO: 8).

[0105] FIGS. 6A-6B: FIGS. 6A-6B show the nucleotide (SEQ ID NO: 21) andpredicted amino acid sequence (SEQ ID NO: 22) ofT7-Human-pro-Asp-2(a)ΔTM

[0106] FIGS. 7A-7B: FIGS. 7A-7B show the nucleotide (SEQ ID NO: 23) andpredicted amino acid sequence (SEQ ID NO: 24) ofT7-caspase-Human-pro-Asp-2(a)ΔTM

[0107] FIGS. 8A-8B: FIGS. 8A-8B show the nucleotide (SEQ ID NO: 25) andpredicted amino acid sequence (SEQ ID NO: 26) of Human-pro-Asp-2(a)ΔTM(low GC)

[0108]FIG. 9: Western blot showing reduction of CTF99 production byHEK125.3 cells transfected with antisense oligomers targeting theHu-Asp2 mRNA.

[0109]FIG. 10: Western blot showing increase in CTF99 production inmouse Neuro-2a cells cotransfected with APP-KK with and without Hu-Asp2only in those cells cotransfected with Hu-Asp2. A further increase inCTF99 production is seen in cells cotransfected with APP-Sw-KK with andwithout Hu-Asp2 only in those cells cotransfected with Hu-Asp2.

[0110]FIG. 11: FIG. 11 shows the predicted amino acid sequence (SEQ IDNO: 30) of Human-Asp2(a)ΔTM.

[0111]FIG. 12: FIG. 12 shows the predicted amino acid sequence (SEQ IDNO: 30) of Human-Asp2(a)ΔTM(His)₆.

DETAILED DESCRIPTION OF THE INVENTION

[0112] A few definitions used in this invention follow, most definitionsto be used are those that would be used by one ordinarily skilled in theart.

[0113] The term “β amyloid peptide” means any peptide resulting frombeta secretase cleavage of APP. This includes peptides of 39, 40, 41, 42and 43 amino acids, extending from the β-secretase cleavage site to 39,40, 41, 42 and 43 amino acids C-terminal to the β-secretase cleavagesite. P amyloid peptide also includes sequences 1-6, SEQ ID NOS: 1-6 ofU.S. Pat. No. 5,750,349, issued 12 May 1998 (incorporated into thisdocument by reference). A β-secretase cleavage fragment disclosed hereis called CTF-99, which extends from β-secretase cleavage site to thecarboxy terminus of APP.

[0114] When an isoform of APP is discussed then what is meant is any APPpolypeptide, including APP variants (including mutations), and APPfragments that exists in humans such as those described in U.S. Pat. No.5,766,846, col 7, lines 45-67, incorporated into this document byreference.

[0115] The term “β-amyloid precursor protein” (APP) as used herein isdefined as a polypeptide that is encoded by a gene of the same namelocalized in humans on the long arm of chromosome 21 and that includes“βAP—here “β-amyloid protein” see above, within its carboxyl third. APPis a glycosylated, single-membrane spanning protein expressed in a widevariety of cells in many mammalian tissues. Examples of specificisotypes of APP which are currently known to exist in humans are the 695amino acid polypeptide described by Kang et. al. (1987) Nature325:733-736 which is designated as the “normal” APP (SEQ ID NOS: 9-10);the 751 amino acid polypeptide described by Ponte et al. (1988) Nature331:525-527 (1988) and Tanzi et al. (1988) Nature 331:528-530 (SEQ IDNOs: 56-57); and the 770-amino acid polypeptide described by Kitaguchiet. al. (1988) Nature 331:530-532 (SEQ ID NOS: 54-55). Examples ofspecific variants of APP include point mutation which can differ in bothposition and phenotype (for review of known variant mutation see Hardy(1992) Nature Genet. 1:233-234). All references cited here incorporatedby reference. The term “APP fragments” as used herein refers tofragments of APP other than those which consist solely of βAP or βAPfragments. That is, APP fragments will include amino acid sequences ofAPP in addition to those which form intact βAP or a fragment of βAP.

[0116] When the term “any amino acid” is used, the amino acids referredto are to be selected from the following, three letter and single letterabbreviations—which may also be used, are provided as follows:

[0117] Alanine, Ala, A; Arginine, Arg, R; Asparagine, Asn, N; Asparticacid, Asp, D; Cysteine, Cys, C; Glutamine, Gln, Q; Glutamic Acid, Glu,E; Glycine, Gly, G; Histidine, His, H; Isoleucine, Ile, I; Leucine, Leu,L; Lysine, Lys, K; Methionine, Met, M; Phenylalanine, Phe, F; Proline,Pro, P; Serine, Ser, S; Threonine, Thr, T; Tryptophan, Trp, W; Tyrosine,Tyr, Y; Valine, Val, V; Aspartic acid or Asparagine, Asx, B; Glutamicacid or Glutamine, Glx, Z; Any amino acid, Xaa, X.

[0118] The present invention describes a method to scan gene databasesfor the simple active site motif characteristic of aspartyl proteases.Eukaryotic aspartyl proteases such as pepsin and renin possess atwo-domain structure which folds to bring two aspartyl residues intoproximity within the active site. These are embedded in the shorttripeptide motif DTG, or more rarely, DSG. Most aspartyl proteases occuras proenzyme whose N-terminus must be cleaved for activation. The DTG orDSG active site motif appears at about residue 65-70 in the proenzyme(prorenin, pepsinogen), but at about residue 25-30 in the active enzymeafter cleavage of the N-terminal prodomain. The limited length of theactive site motif makes it difficult to search collections of short,expressed sequence tags (EST) for novel aspartyl proteases. ESTsequences typically average 250 nucleotides or less, and so would encode80-90 amino acid residues or less. That would be too short a sequence tospan the two active site motifs. The preferred method is to scandatabases of hypothetical or assembled protein coding sequences. Thepresent invention describes a computer method to identify candidateaspartyl proteases in protein sequence databases. The method was used toidentify seven candidate aspartyl protease sequences in theCaenorhabditis elegans genome. These sequences were then used toidentify by homology search Hu-Asp1 and two alternative splice variantsof Hu-Asp2, designated herein as Hu-Asp2(a) and Hu-Asp2(b).

[0119] In a major aspect of the invention disclosed here we provide newinformation about APP processing. Pathogeneic processing of the amyloidprecursor protein (APP) via the Aβ pathway requires the sequentialaction of two proteases referred to as β-secretase and γ-secretase.Cleavage of APP by the β-secretase and γ-secretase generates theN-terminus and C-terminus of the Aβ peptide, respectively. Because overproduction of the Aβ peptide, particularly the Aβ₁₋₄₂, has beenimplicated in the initiation of Alzheimer's disease, inhibitors ofeither the β-secretase and/or the γ-secretase have potential in thetreatment of Alzheimer's disease. Despite the importance of theβ-secretase and γ-secretase in the pathogenic processing of APP,molecular definition of these enzymes has not been accomplished to date.That is, it was not known what enzymes were required for cleavage ateither the β-secretase or the γ-secretase cleavage site. The sitesthemselves were known because APP was known and the Aβ₁₋₄₂, peptide wasknown, see U.S. Pat. No. 5,766,846 and U.S. Pat. No. 5,837,672,(incorporated by reference, with the exception to reference to “soluble”peptides). But what enzyme was involved in producing the Aβ₁₋₄₂, peptidewas unknown.

[0120] Alignment of the amino acid sequences of Hu-Asp2 with other knownaspartyl proteases reveals a similar domain organization. All of thesequences contain a signal sequence followed by a pro-segment and thecatalytic domain containing 2 copies of the aspartyl protease activesite motif (DTG/DSG) separated by approximately 180 amino acid residues.Comparison of the processing site for proteolytic removal of thepro-segment in the mature forms of pepsin A, pepsin C, cathepsin D,cathepsin E and renin reveals that the mature forms of these enzymescontain between 31-35 amino acid residues upstream of the first DTGmotif. Inspection of this region in the Hu-Asp-2 amino acid sequenceindicates a preferred processing site within the sequence GRR↓GS (SEQ IDNO: 68) as proteolytic processing of pro-protein precursors commonlyoccurs at site following dibasic amino acid pairs (e.g. RR). Also,processing at this site would yield a mature enzyme with 35 amino acidresidues upstream of the first DTG, consistent with the processing sitesfor other aspartyl proteases. In the absence of self-activation ofHu-Asp2 or a knowledge of the endogenous protease that processes Hu-Asp2at this site, a recombinant form was engineered by introducing arecognition site for the PreSission protease (LEVLFQ↓GP; SEQ ID NO: 62)into the expression plasmids for bacterial, insect cell, and mammaliancell expression of pro-Hu-Asp2. In each case, the Gly residue in P1′position corresponds to the Gly residue 35 amino acids upstream of thefirst DTG motif in Hu-Asp2.

[0121] The present invention involves the molecular definition ofseveral novel human aspartyl proteases and one of these, referred to asHu-Asp-2(a) and Hu-Asp2(b), has been characterized in detail. Previousforms of asp 1 and asp 2 have been disclosed, see EP 0848062 A2 and EP0855444A2, inventors David Powel et al., assigned to Smith Kline BeechamCorp. (incorporated by reference). Herein are disclosed old and newforms of Hu-Asp 2. For the first time they are expressed in active form,their substrates are disclosed, and their specificity is disclosed.Prior to this disclosure cell or cell extracts were required to cleavethe β-secretase site, now purified protein can be used in assays, alsodescribed here. Based on the results of (1) antisense knock outexperiments, (2) transient transfection knock in experiments, and (3)biochemical experiments using purified recombinant Hu-Asp-2, wedemonstrate that Hu-Asp-2 is the β-secretase involved in the processingof APP. Although the nucleotide and predicted amino acid sequence ofHu-Asp-2(a) has been reported, see above, see EP 0848062 A2 and EP0855444A2, no functional characterization of the enzyme was disclosed.Here the authors characterize the Hu-Asp-2 enzyme and are able toexplain why it is a critical and essential enzyme required in theformation of Aβ₁₋₄₂, peptide and possible a critical step in thedevelopment of AD.

[0122] In another embodiment the present invention also describes anovel splice variant of Hu-Asp2, referred to as Hu-Asp-2(b), that hasnever before been disclosed.

[0123] In another embodiment, the invention provides isolated nucleicacid molecules comprising a polynucleotide encoding a polypeptideselected from the group consisting of human aspartyl protease 1(Hu-Asp1) and two alternative splice variants of human aspartylprotease-2 (Hu-Asp2), designated herein as Hu-Asp2(a) and Hu-Asp2(b). Asused herein, all references to “Hu-Asp2” should be understood to referto both Hu-Asp2(a) and Hu-Asp2(b). Hu-Asp1 is expressed most abundantlyin pancreas and prostate tissues, while Hu-Asp2(a) and Hu-Asp2(b) areexpressed most abundantly in pancreas and brain tissues. The inventionalso provides isolated Hu-Asp1, Hu-Asp2(a), and Hu-Asp2(b) polypeptides,as well as fragments thereof which exhibit aspartyl protease activity.

[0124] The predicted amino acid sequences of Hu-Asp1, Hu-Asp2(a) andHu-Asp2(b) share significant homology with previously identifiedmammalian aspartyl proteases such as pepsinogen A, pepsinogen B,cathepsin D, cathepsin E, and renin. P. B. Szecs, Scand. J. Clin. Lab.Invest. 52:(Suppl. 210 5-22 (1992)). These enzymes are characterized bythe presence of a duplicated DTG/DSG sequence motif. The Hu-Asp1 andHuAsp2 polypeptides disclosed herein also exhibit extremely highhomology with the ProSite consensus motif for aspartyl proteasesextracted from the SwissProt database.

[0125] The nucleotide sequence given as residues 1-1554 of SEQ ID NO:1corresponds to the nucleotide sequence encoding Hu-Asp1, the nucleotidesequence given as residues 1-1503 of SEQ ID NO:3 corresponds to thenucleotide sequence encoding Hu-Asp2(a), and the nucleotide sequencegiven as residues 1-1428 of SEQ ID NO: 5 corresponds to the nucleotidesequence encoding Hu-Asp2(b). The isolation and sequencing of DNAencoding Hu-Asp 1, Hu-Asp2(a), and Hu-Asp2(b) is described below inExamples 1 and 2.

[0126] As is described in Examples 1 and 2, automated sequencing methodswere used to obtain the nucleotide sequence of Hu-Asp1, Hu-Asp2(a), andHu-Asp-2(b). The Hu-Asp nucleotide sequences of the present inventionwere obtained for both DNA strands, and are believed to be 100%accurate. However, as is known in the art, nucleotide sequence obtainedby such automated methods may contain some errors. Nucleotide sequencesdetermined by automation are typically at least about 90%, moretypically at least about 95% to at least about 99.9% identical to theactual nucleotide sequence of a given nucleic acid molecule. The actualsequence may be more precisely determined using manual sequencingmethods, which are well known in the art. An error in sequence whichresults in an insertion or deletion of one or more nucleotides mayresult in a frame shift in translation such that the predicted aminoacid sequence will differ from that which would be predicted from theactual nucleotide sequence of the nucleic acid molecule, starting at thepoint of the mutation. The Hu-Asp DNA of the present invention includescDNA, chemically synthesized DNA, DNA isolated by PCR, genomic DNA, andcombinations thereof. Genomic Hu-Asp DNA may be obtained by screening agenomic library with the Hu-Asp2 cDNA described herein, using methodsthat are well known in the art, or with oligonucleotides chosen from theHu-Asp2 sequence that will prime the polymerase chain reaction (PCR).RNA transcribed from Hu-Asp DNA is also encompassed by the presentinvention.

[0127] Due to the degeneracy of the genetic code, two DNA sequences maydiffer and yet encode identical amino acid sequences. The presentinvention thus provides isolated nucleic acid molecules having apolynucleotide sequence encoding any of the Hu-Asp polypeptides of theinvention, wherein said polynucleotide sequence encodes a Hu-Asppolypeptide having the complete amino acid sequence of SEQ ID NO: 2, SEQID NO: 4, SEQ ID NO: 6, or fragments thereof.

[0128] Also provided herein are purified Hu-Asp polypeptides, bothrecombinant and non-recombinant. Most importantly, methods to produceHu-Asp2 polypeptides in active form are provided. These includeproduction of Hu-Asp2 polypeptides and variants thereof in bacterialcells, insect cells, and mammalian cells, also in forms that allowsecretion of the Hu-Asp2 polypeptide from bacterial, insect or mammaliancells into the culture medium, also methods to produce variants ofHu-Asp2 polypeptide incorporating amino acid tags that facilitatesubsequent purification. In a preferred embodiment of the invention theHu-Asp2 polypeptide is converted to a proteolytically active form eitherin transformed cells or after purification and cleavage by a secondprotease in a cell-free system, such active forms of the Hu-Asp2polypeptide beginning with the N-terminal sequence TQHGIR (SEQ ID NO:69) or ETDEEP (SEQ ID NO: 70). The sequence TQHGIR (SEQ ID NO: 69)represents the amino-terminus of Asp2(a) or Asp2(b) beginning withresidue 22 of SEQ ID NO: 4 or 6, after cleavage of a putative 21 residuesignal peptide. Recombinant Asp2(a) expressed in and purified frominsect cells was observed to have this amino terminus, presumably as aresult of cleavage by a signal peptidase. The sequence ETDEEP (SEQ IDNO: 70) represents the amino-terminus of Asp2(a) or Asp2(b) beginningwith residue 46 of SEQ ID NO: 4 or 6, as observed when Asp2(a) has beenrecombinantly produced in CHO cells (presumably after cleavage by both arodent signal peptidase and another rodent peptidase that removes apropeptide sequence). The Asp2(a) produced in the CHO cells possessesβ-secretase activity, as described in greater detail in Examples 11 and12. Variants and derivatives, including fragments, of Hu-Asp proteinshaving the native amino acid sequences given in SEQ ID Nos: 2, 4, and 6that retain any of the biological activities of Hu-Asp are also withinthe scope of the present invention. Of course, one of ordinary skill inthe art will readily be able to determine whether a variant, derivative,or fragment of a Hu-Asp protein displays Hu-Asp activity by subjectingthe variant, derivative, or fragment to a standard aspartyl proteaseassay. Fragments of Hu-Asp within the scope of this invention includethose that contain the active site domain containing the amino acidsequence DTG, fragments that contain the active site domain amino acidsequence DSG, fragments containing both the DTG and DSG active sitesequences, fragments in which the spacing of the DTG and DSG active sitesequences has been lengthened, fragments in which the spacing has beenshortened. Also within the scope of the invention are fragments ofHu-Asp in which the transmembrane domain has been removed to allowproduction of Hu-Asp2 in a soluble form. In another embodiment of theinvention, the two halves of Hu-Asp2, each containing a single activesite DTG or DSG sequence can be produced independently as recombinantpolypeptides, then combined in solution where they reconstitute anactive protease.

[0129] Thus, the invention provides a purified polypeptide comprising afragment of a mammalian Asp2 protein, wherein said fragment lacks theAsp2 transmembrane domain of said Asp2 protein, and wherein thepolypeptide and the fragment retain the β-secretase activity of saidmammalian Asp2 protein. In a preferred embodiment, the purifiedpolypeptide comprises a fragment of a human Asp2 protein that retainsthe β-secretase activity of the human Asp2 protein from which it wasderived. Examples include:

[0130] a purified polypeptide that comprises a fragment of Asp2(a)having the amino acid sequence set forth in SEQ ID NO: 4, wherein thepolypeptide lacks transmembrane domain amino acids 455 to 477 of SEQ IDNO: 4;

[0131] a purified polypeptide as described in the preceding paragraphthat further lacks cytoplasmic domain amino acids 478 to 501 of SEQ IDNO: 4;

[0132] a purified polypeptide as described in either of the precedingparagraphs that further lacks amino acids 420-454 of SEQ ID NO: 4, whichconstitute a putative alpha helical region between the catalytic domainand the transmembrane domain that is believed to be unnecessary forβ-secretase activity;

[0133] a purified polypeptide that comprises an amino acid sequence thatincludes amino acids 58 to 419 of SEQ ID NO: 4, and that lacks aminoacids 22 to 57 of SEQ ID NO: 4;

[0134] a purified polypeptide that comprises an amino acid sequence thatincludes amino acids 46 to 419 of SEQ ID NO: 4, and that lacks aminoacids 22 to 45 of SEQ ID NO: 4;

[0135] a purified polypeptide that comprises an amino acid sequence thatincludes amino acids 22 to 454 of SEQ ID NO: 4;

[0136] a purified polypeptide that comprises a fragment of Asp2(b)having the amino acid sequence set forth in SEQ ID NO: 6, and whereinsaid polypeptide lacks transmembrane domain amino acids 430 to 452 ofSEQ ID NO: 6;

[0137] a purified polypeptide as described in the preceding paragraphthat further lacks cytoplasmic domain amino acids 453 to 476 of SEQ IDNO: 6;

[0138] a purified polypeptide as described in either of the precedingtwo paragraphs that further lacks amino acids 395-429 of SEQ ID NO: 6,which constitute a putative alpha helical region between the catalyticdomain and the transmembrane domain that is believed to be unnecessaryfor β-secretase activity;

[0139] a purified polypeptide comprising an amino acid sequence thatincludes amino acids 58 to 394 of SEQ ID NO: 6, and that lacks aminoacids 22 to 57 of SEQ ID NO: 4;

[0140] a purified polypeptide comprising an amino acid sequence thatincludes amino acids 46 to 394 of SEQ ID NO: 6, and that lacks aminoacids 22 to 45 of SEQ ID NO: 6; and

[0141] a purified polypeptide comprising an amino acid sequence thatincludes amino acids 22 to 429 of SEQ ID NO: 6.

[0142] Also included as part of the invention is a purifiedpolynucleotide comprising a nucleotide sequence that encodes suchpolypeptides; a vector comprising a polynucleotide that encodes suchpolypeptides; and a host cell transformed or transfected with such apolynucleotide or vector.

[0143] Hu-Asp variants may be obtained by mutation of nativeHu-Asp-encoding nucleotide sequences, for example. A Hu-Asp variant, asreferred to herein, is a polypeptide substantially homologous to anative Hu-Asp polypeptide but which has an amino acid sequence differentfrom that of native Hu-Asp because of one or more deletions, insertions,or substitutions in the amino acid sequence. The variant amino acid ornucleotide sequence is preferably at least about 80% identical, morepreferably at least about 90% identical, and most preferably at leastabout 95% identical, to a native Hu-Asp sequence. Thus, a variantnucleotide sequence which contains, for example, 5 point mutations forevery one hundred nucleotides, as compared to a native Hu-Asp gene, willbe 95% identical to the native protein. The percentage of sequenceidentity, also termed homology, between a native and a variant Hu-Aspsequence may also be determined, for example, by comparing the twosequences using any of the computer programs commonly employed for thispurpose, such as the Gap program (Wisconsin Sequence Analysis Package,Version 8 for Unix, Genetics Computer Group, University Research Park,Madison Wis.), which uses the algorithm of Smith and Waterman (Adv.Appl. Math. 2: 482-489 (1981)).

[0144] Alterations of the native amino acid sequence may be accomplishedby any of a number of known techniques. For example, mutations may beintroduced at particular locations by procedures well known to theskilled artisan, such as oligonucleotide-directed mutagenesis, which isdescribed by Walder et al. (Gene 42:133 (1986)); Bauer et al. (Gene37:73 (1985)); Craik (BioTechniques, January 1985, pp. 12-19); Smith etal. (Genetic Engineering: Principles and Methods, Plenum Press (1981));and U.S. Pat. Nos. 4,518,584 and 4,737,462.

[0145] Hu-Asp variants within the scope of the invention may compriseconservatively substituted sequences, meaning that one or more aminoacid residues of a Hu-Asp polypeptide are replaced by different residuesthat do not alter the secondary and/or tertiary structure of the Hu-Asppolypeptide. Such substitutions may include the replacement of an aminoacid by a residue having similar physicochemical properties, such assubstituting one aliphatic residue (Ile, Val, Leu or Ala) for another,or substitution between basic residues Lys and Arg, acidic residues Gluand Asp, amide residues Gln and Asn, hydroxyl residues Ser and Tyr, oraromatic residues Phe and Tyr. Further information regarding makingphenotypically silent amino acid exchanges may be found in Bowie et al.,Science 247:1306-1310 (1990). Other Hu-Asp variants which might retainsubstantially the biological activities of Hu-Asp are those where aminoacid substitutions have been made in areas outside functional regions ofthe protein.

[0146] In another aspect, the invention provides an isolated nucleicacid molecule comprising a polynucleotide which hybridizes understringent conditions to a portion of the nucleic acid moleculesdescribed above, e.g., to at least about 15 nucleotides, preferably toat least about 20 nucleotides, more preferably to at least about 30nucleotides, and still more preferably to at least about from 30 to atleast about 100 nucleotides, of one of the previously described nucleicacid molecules. Such portions of nucleic acid molecules having thedescribed lengths refer to, e.g., at least about 15 contiguousnucleotides of the reference nucleic acid molecule. By stringenthybridization conditions is intended overnight incubation at about 42°C. for about 2.5 hours in 6×SSC/0.1% SDS, followed by washing of thefilters four times for 15 minutes in 1.0×SSC at 65° C., 0.1% SDS.

[0147] Fragments of the Hu-Asp encoding nucleic acid molecules describedherein, as well as polynucleotides capable of hybridizing to suchnucleic acid molecules may be used as a probe or as primers in apolymerase chain reaction (PCR). Such probes may be used, e.g., todetect the presence of Hu-Asp nucleic acids in in vitro assays, as wellas in Southern and northern blots. Cell types expressing Hu-Asp may alsobe identified by the use of such probes. Such procedures are well known,and the skilled artisan will be able to choose a probe of a lengthsuitable to the particular application. For PCR, 5′ and 3′ primerscorresponding to the termini of a desired Hu-Asp nucleic acid moleculeare employed to isolate and amplify that sequence using conventionaltechniques.

[0148] Other useful fragments of the Hu-Asp nucleic acid molecules areantisense or sense oligonucleotides comprising a single stranded nucleicacid sequence capable of binding to a target Hu-Asp mRNA (using a sensestrand), or Hu-Asp DNA (using an antisense strand) sequence. In apreferred embodiment of the invention these Hu-Asp antisenseoligonucleotides reduce Hu-Asp mRNA and consequent production of Hu-Asppolypeptides.

[0149] In another aspect, the invention includes Hu-Asp polypeptideswith or without associated native pattern glycosylation. Both Hu-Asp1and Hu-Asp2 have canonical acceptor sites for Asn-linked sugars, withHu-Asp1 having two of such sites, and Hu-Asp2 having four. Hu-Aspexpressed in yeast or mammalian expression systems (discussed below) maybe similar to or significantly different from a native Hu-Asppolypeptide in molecular weight and glycosylation pattern. Expression ofHu-Asp in bacterial expression systems will provide non-glycosylatedHu-Asp.

[0150] The polypeptides of the present invention are preferably providedin an isolated form, and preferably are substantially purified. Hu-Asppolypeptides may be recovered and purified from tissues, cultured cells,or recombinant cell cultures by well-known methods, including ammoniumsulfate or ethanol precipitation, anion or cation exchangechromatography, phosphocellulose chromatography, hydrophobic interactionchromatography, affinity chromatography, hydroxylapatite chromatography,lectin chromatography, and high performance liquid chromatography(HPLC). In a preferred embodiment, an amino acid tag is added to theHu-Asp polypeptide using genetic engineering techniques that are wellknown to practitioners of the art which include addition of sixhistidine amino acid residues to allow purification by binding to nickelimmobilized on a suitable support, epitopes for polyclonal or monoclonalantibodies including but not limited to the T7 epitope, the myc epitope,and the V5a epitope, and fusion of Hu-Asp2 to suitable protein partnersincluding but not limited to glutathione-S-transferase or maltosebinding protein. In a preferred embodiment these additional amino acidsequences are added to the C-terminus of Hu-Asp but may be added to theN-terminus or at intervening positions within the Hu-Asp2 polypeptide.

[0151] The present invention also relates to vectors comprising thepolynucleotide molecules of the invention, as well as host celltransformed with such vectors. Any of the polynucleotide molecules ofthe invention may be joined to a vector, which generally includes aselectable marker and an origin of replication, for propagation in ahost. Because the invention also provides Hu-Asp polypeptides expressedfrom the polynucleotide molecules described above, vectors for theexpression of Hu-Asp are preferred. The vectors include DNA encoding anyof the Hu-Asp polypeptides described above or below, operably linked tosuitable transcriptional or translational regulatory sequences, such asthose derived from a mammalian, microbial, viral, or insect gene.Examples of regulatory sequences include transcriptional promoters,operators, or enhancers, mRNA ribosomal binding sites, and appropriatesequences which control transcription and translation. Nucleotidesequences are operably linked when the regulatory sequence functionallyrelates to the DNA encoding Hu-Asp. Thus, a promoter nucleotide sequenceis operably linked to a Hu-Asp DNA sequence if the promoter nucleotidesequence directs the transcription of the Hu-Asp sequence.

[0152] Selection of suitable vectors to be used for the cloning ofpolynucleotide molecules encoding Hu-Asp, or for the expression ofHu-Asp polypeptides, will of course depend upon the host cell in whichthe vector will be transformed, and, where applicable, the host cellfrom which the Hu-Asp polypeptide is to be expressed. Suitable hostcells for expression of Hu-Asp polypeptides include prokaryotes, yeast,and higher eukaryotic cells, each of which is discussed below.

[0153] The Hu-Asp polypeptides to be expressed in such host cells mayalso be fusion proteins which include regions from heterologousproteins. Such regions may be included to allow, e.g., secretion,improved stability, or facilitated purification of the polypeptide. Forexample, a sequence encoding an appropriate signal peptide can beincorporated into expression vectors. A DNA sequence for a signalpeptide (secretory leader) may be fused inframe to the Hu-Asp sequenceso that Hu-Asp is translated as a fusion protein comprising the signalpeptide. A signal peptide that is functional in the intended host cellpromotes extracellular secretion of the Hu-Asp polypeptide. Preferably,the signal sequence will be cleaved from the Hu-Asp polypeptide uponsecretion of Hu-Asp from the cell. Nonlimiting examples of signalsequences that can be used in practicing the invention include the yeastIfactor and the honeybee melatin leader in sf9 insect cells.

[0154] In a preferred embodiment, the Hu-Asp polypeptide will be afusion protein which includes a heterologous region used to facilitatepurification of the polypeptide. Many of the available peptides used forsuch a function allow selective binding of the fusion protein to abinding partner. For example, the Hu-Asp polypeptide may be modified tocomprise a peptide to form a fusion protein which specifically binds toa binding partner, or peptide tag. Nonlimiting examples of such peptidetags include the 6-His tag, thioredoxin tag, hemaglutinin tag, GST tag,and OmpA signal sequence tag. As will be understood by one of skill inthe art, the binding partner which recognizes and binds to the peptidemay be any molecule or compound including metal ions (e.g., metalaffinity columns), antibodies, or fragments thereof, and any protein orpeptide which binds the peptide, such as the FLAG tag.

[0155] Suitable host cells for expression of Hu-Asp polypeptidesincludes prokaryotes, yeast, and higher eukaryotic cells. Suitableprokaryotic hosts to be used for the expression of Hu-Asp includebacteria of the genera Escherichia, Bacillus, and Salmonella, as well asmembers of the genera Pseudomonas, Streptomyces, and Staphylococcus. Forexpression in, e.g., E. coli, a Hu-Asp polypeptide may include anN-terminal methionine residue to facilitate expression of therecombinant polypeptide in a prokaryotic host. The N-terminal Met mayoptionally then be cleaved from the expressed Hu-Asp polypeptide. OtherN-terminal amino acid residues can be added to the Hu-Asp polypeptide tofacilitate expression in Escherichia coli including but not limited tothe T7 leader sequence, the T7-caspase 8 leader sequence, as well asothers leaders including tags for purification such as the 6-His tag(Example 9). Hu-Asp polypeptides expressed in E. coli may be shortenedby removal of the cytoplasmic tail, the transmembrane domain, or themembrane proximal region. Hu-Asp polypeptides expressed in E. coli maybe obtained in either a soluble form or as an insoluble form which mayor may not be present as an inclusion body. The insoluble polypeptidemay be rendered soluble by guanidine HCl, urea or other proteindenaturants, then refolded into a soluble form before or afterpurification by dilution or dialysis into a suitable aqueous buffer. Ifthe inactive proform of the Hu-Asp was produced using recombinantmethods, it may be rendered active by cleaving off the prosegment with asecond suitable protease such as human immunodeficiency virus protease.

[0156] Expression vectors for use in prokaryotic hosts generallycomprises one or more phenotypic selectable marker genes. Such genesgenerally encode, e.g., a protein that confers antibiotic resistance orthat supplies an auxotrophic requirement. A wide variety of such vectorsare readily available from commercial sources. Examples include pSPORTvectors, pGEM vectors (Promega), pPROEX vectors (LTI, Bethesda, Md.),Bluescript vectors (Stratagene), pET vectors (Novagen) and pQE vectors(Qiagen).

[0157] Hu-Asp may also be expressed in yeast host cells from generaincluding Saccharomyces, Pichia, and Kluveromyces. Preferred yeast hostsare S. cerevisiae and P. pastoris. Yeast vectors will often contain anorigin of replication sequence from a 2T yeast plasmid, an autonomouslyreplicating sequence (ARS), a promoter region, sequences forpolyadenylation, sequences for transcription termination, and aselectable marker gene. Vectors replicable in both yeast and E. coli(termed shuttle vectors) may also be used. In addition to theabove-mentioned features of yeast vectors, a shuttle vector will alsoinclude sequences for replication and selection in E. coli. Directsecretion of Hu-Asp polypeptides expressed in yeast hosts may beaccomplished by the inclusion of nucleotide sequence encoding the yeastI-factor leader sequence at the 5′ end of the Hu-Asp-encoding nucleotidesequence.

[0158] Insect host cell culture systems may also be used for theexpression of Hu-Asp polypeptides. In a preferred embodiment, the Hu-Asppolypeptides of the invention are expressed using an insect cellexpression system (see Example 10). Additionally, a baculovirusexpression system can be used for expression in insect cells as reviewedby Luckow and Summers, Bio/Technology 6:47 (1988).

[0159] In another preferred embodiment, the Hu-Asp polypeptide isexpressed in mammalian host cells. Nonlimiting examples of suitablemammalian cell lines include the COS7 line of monkey kidney cells(Gluzman et al., Cell 23:175 (1981)), human embyonic kidney cell line293, and Chinese hamster ovary (CHO) cells. Preferably, Chinese hamsterovary (CHO) cells are used for expression of Hu-Asp proteins (Example11).

[0160] The choice of a suitable expression vector for expression of theHu-Asp polypeptides of the invention will of course depend upon thespecific mammalian host cell to be used, and is within the skill of theordinary artisan. Examples of suitable expression vectors include pcDNA3(Invitrogen) and pSVL (Pharmacia Biotech). A preferred vector forexpression of Hu-Asp polypeptides is pcDNA3.1-Hygro (Invitrogen).Expression vectors for use in mammalian host cells may includetranscriptional and translational control sequences derived from viralgenomes. Commonly used promoter sequences and enhancer sequences whichmay be used in the present invention include, but are not limited to,those derived from human cytomegalovirus (CMV), Adenovirus 2, Polyomavirus, and Simian virus 40 (SV40). Methods for the construction ofmammalian expression vectors are disclosed, for example, in Okayama andBerg (Mol. Cell. Biol. 3:280 (1983)); Cosman et al. (Mol. Immunol.23:935 (1986)); Cosman et al. (Nature 312:768 (1984)); EP-A-0367566; andWO 91/18982.

[0161] The polypeptides of the present invention may also be used toraise polyclonal and monoclonal antibodies, which are useful indiagnostic assays for detecting Hu-Asp polypeptide expression. Suchantibodies may be prepared by conventional techniques. See, for example,Antibodies: A Laboratory Manual, Harlow and Land (eds.), Cold SpringHarbor Laboratory Press, Cold Spring Harbor, N.Y., (1988); MonoclonalAntibodies, Hybridomas: A New Dimension in Biological Analyses, Kennetet al. (eds.), Plenum Press, New York (1980). Synthetic peptidescomprising portions of Hu-Asp containing 5 to 20 amino acids may also beused for the production of polyclonal or monoclonal antibodies afterlinkage to a suitable carrier protein including but not limited tokeyhole limpet hemacyanin (KLH), chicken ovalbumin, or bovine serumalbumin using various cross-linking reagents including carbodimides,glutaraldehyde, or if the peptide contains a cysteine,N-methylmaleimide. A preferred peptide for immunization when conjugatedto KLH contains the C-terminus of Hu-Asp1 or Hu-Asp2 comprisingQRRPRDPEVVNDESSLVRHRWK (SEQ ID NO: 2, residues 497-518) orLRQQHDDFADDISLLK (SEQ ID NO:4, residues 486-501), respectively. See SEQID NOS: 33-34.

[0162] The Hu-Asp nucleic acid molecules of the present invention arealso valuable for chromosome identification, as they can hybridize witha specific location on a human chromosome. Hu-Asp1 has been localized tochromosome 21, while Hu-Asp2 has been localized to chromosome11q23.3-24.1. There is a current need for identifying particular siteson the chromosome, as few chromosome marking reagents based on actualsequence data (repeat polymorphisms) are presently available for markingchromosomal location. Once a sequence has been mapped to a precisechromosomal location, the physical position of the sequence on thechromosome can be correlated with genetic map data. The relationshipbetween genes and diseases that have been mapped to the same chromosomalregion can then be identified through linkage analysis, wherein thecoinheritance of physically adjacent genes is determined. Whether a geneappearing to be related to a particular disease is in fact the cause ofthe disease can then be determined by comparing the nucleic acidsequence between affected and unaffected individuals.

[0163] In another embodiment, the invention relates to a method ofassaying Hu-Asp function, specifically Hu-Asp2 function which involvesincubating in solution the Hu-Asp polypeptide with a suitable substrateincluding but not limited to a synthetic peptide containing theβ-secretase cleavage site of APP, preferably one containing the mutationfound in a Swedish kindred with inherited AD in which KM is changed toNL, such peptide comprising the sequence SEVNLDAEFR (SEQ ID NO: 63) inan acidic buffering solution, preferably an acidic buffering solution ofpH 5.5 (see Example 12) using cleavage of the peptide monitored by highperformance liquid chromatography as a measure of Hu-Asp proteolyticactivity. Preferred assays for proteolytic activity utilize internallyquenched peptide assay substrates. Such suitable substrates includepeptides which have attached a paired flurophore and quencher includingbut not limited to 7-amino-4-methyl coumarin and dinitrophenol,respectively, such that cleavage of the peptide by the Hu-Asp results inincreased fluorescence due to physical separation of the flurophore andquencher. Other paired flurophores and quenchers includebodipy-tetramethylrhodamine and QSY-5 (Molecular Probes, Inc.). In avariant of this assay, biotin or another suitable tag may be placed onone end of the peptide to anchor the peptide to a substrate assay plateand a flurophore may be placed at the other end of the peptide. Usefulflurophores include those listed above as well as Europium labels suchas W8044 (EG&g Wallac, Inc.). Cleavage of the peptide by Asp2 willrelease the flurophore or other tag from the plate, allowing compoundsto be assayed for inhibition of Asp2 proteolytic cleavage as shown by anincrease in retained fluorescence. Preferred colorimetric assays ofHu-Asp proteolytic activity utilize other suitable substrates thatinclude the P2 and P1 amino acids comprising the recognition site forcleavage linked to o-nitrophenol through an amide linkage, such thatcleavage by the Hu-Asp results in an increase in optical density afteraltering the assay buffer to alkaline pH.

[0164] In another embodiment, the invention relates to a method for theidentification of an agent that increases the activity of a Hu-Asppolypeptide selected from the group consisting of Hu-Asp1, Hu-Asp2(a),and Hu-Asp2(b), the method comprising

[0165] (a) determining the activity of said Hu-Asp polypeptide in thepresence of a test agent and in the absence of a test agent; and

[0166] (b) comparing the activity of said Hu-Asp polypeptide determinedin the presence of said test agent to the activity of said Hu-Asppolypeptide determined in the absence of said test agent;

[0167] whereby a higher level of activity in the presence of said testagent than in the absence of said test agent indicates that said testagent has increased the activity of said Hu-Asp polypeptide. Such testscan be performed with Hu-Asp polypeptide in a cell free system and withcultured cells that express Hu-Asp as well as variants or isoformsthereof.

[0168] In another embodiment, the invention relates to a method for theidentification of an agent that decreases the activity of a Hu-Asppolypeptide selected from the group consisting of Hu-Asp1, Hu-Asp2(a),and Hu-Asp2(b), the method comprising

[0169] (a) determining the activity of said Hu-Asp polypeptide in thepresence of a test agent and in the absence of a test agent; and

[0170] (b) comparing the activity of said Hu-Asp polypeptide determinedin the presence of said test agent to the activity of said Hu-Asppolypeptide determined in the absence of said test agent;

[0171] whereby a lower level of activity in the presence of said testagent than in the absence of said test agent indicates that said testagent has decreased the activity of said Hu-Asp polypeptide. Such testscan be performed with Hu-Asp polypeptide in a cell free system and withcultured cells that express Hu-Asp as well as variants or isoformsthereof.

[0172] In another embodiment, the invention relates to a novel cell line(HEK125.3 cells) for measuring processing of amyloid β peptide (Aβ) fromthe amyloid protein precursor (APP). The cells are stable transformantsof human embryonic kidney 293 cells (HEK293) with a bicistronic vectorderived from pIRES-EGFP (Clontech) containing a modified human APP cDNA,an internal ribosome entry site and an enhanced green fluorescentprotein (EGFP) cDNA in the second cistron. The APP cDNA was modified byadding two lysine codons to the carboxyl terminus of the APP codingsequence. This increases processing of Aβ peptide from human APP by 2-4fold. This level of Aβ peptide processing is 60 fold higher than is seenin nontransformed HEK293 cells. HEK125.3 cells will be useful for assaysof compounds that inhibit Aβ peptide processing. This invention alsoincludes addition of two lysine residues to the C-terminus of other APPisoforms including the 751 and 770 amino acid isoforms, to isoforms ofAPP having mutations found in human AD including the Swedish KM→NL andV717→F. mutations, to C-terminal fragments of APP, such as thosebeginning with the β-secretase cleavage site, to C-terminal fragments ofAPP containing the β-secretase cleavage site which have been operablylinked to an N-terminal signal peptide for membrane insertion andsecretion, and to C-terminal fragments of APP which have been operablylinked to an N-terminal signal peptide for membrane insertion andsecretion and a reporter sequence including but not limited to greenfluorescent protein or alkaline phosphatase, such that β-secretasecleavage releases the reporter protein from the surface of cellsexpressing the polypeptide.

[0173] Having generally described the invention, the same will be morereadily understood by reference to the following examples, which areprovided by way of illustration and are not intended as limiting.

EXAMPLE 1 Development of a Search Algorithm Useful for theIdentification of Aspartyl Proteases, and Identification of C. elegansAspartyl Protease Genes in Wormpep 12

[0174] Materials and Methods:

[0175] Classical aspartyl proteases such as pepsin and renin possess atwo-domain structure which folds to bring two aspartyl residues intoproximity within the active site. These are embedded in the shorttripeptide motif DTG, or more rarely, DSG. The DTG or DSG active sitemotif appears at about residue 25-30 in the enzyme, but at about 65-70in the proenzyme (prorenin, pepsinogen). This motif appears again about150-200 residues downstream. The proenzyme is activated by cleavage ofthe N-terminal prodomain. This pattern exemplifies the double domainstructure of the modern day aspartyl enzymes which apparently arose bygene duplication and divergence. Thus;NH₂------------X------D²⁵TG---------------Y-------D^(Y+25)TG----------------C

[0176] where X denotes the beginning of the enzyme, following theN-terminal prodomain, and Y denotes the center of the molecule where thegene repeat begins again.

[0177] In the case of the retroviral enzymes such as the HIV protease,they represent only a half of the two-domain structures of well-knownenzymes like pepsin, cathepsin D, renin, etc. They have no prosegment,but are carved out of a polyprotein precursor containing the gag and polproteins of the virus. They can be represented by:NH2---------D25TG---------------------C100

[0178] This “monomer” only has about 100 aa, so is extremelyparsimonious as compared to the other aspartyl protease “dimers” whichhave of the order of 330 or so aa, not counting the N-terminalprodomain.

[0179] The limited length of the eukaryotic aspartyl protease activesite motif makes it difficult to search EST collections for novelsequences. EST sequences typically average 250 nucleotides, and so inthis case would be unlikely to span both aspartyl protease active sitemotifs. Instead, we turned to the C. elegans genome. The C. elegansgenome is estimated to contain around 13,000 genes. Of these, roughly12,000 have been sequenced and the corresponding hypothetical openreading frame (ORF) has been placed in the database Wormpep12. We usedthis database as the basis for a whole genome scan of a higher eukaryotefor novel aspartyl proteases, using an algorithm that we developedspecifically for this purpose. The following AWK script for locatingproteins containing two DTG or DSG motifs was used for the search, whichwas repeated four times to recover all pairwise combinations of theaspartyl motif. BEGIN{RS=“>”}     /* defines “>” as record         separator for FASTA format */ {pos = index($0,“DTG”)   /*finds“DTG” in record*/ if(pos>0) {rest = substr($0,pos+3)  /*get rest ofrecord          after first DTG*/ pos2 = index(rest,“DTG”)   /*findsecond DTG*/ if (pos2>0) printf (“%s%s\n”,“>”,$0)}  /*report hits*/}}

[0180] The AWK script shown above was used to search Wormpep 12, whichwas downloaded from ftp.sanger.ac.uk/pub/databases/wormpep, for sequenceentries containing at least two DTG or DSG motifs. Using AWK limitedeach record to 3000 characters or less. Thus, 35 or so larger recordswere eliminated manually from

[0181] Wormpep12 as in any case these were unlikely to encode aspartylproteases.

[0182] Results and Discussion:

[0183] The Wormpep 12 database contains 12,178 entries, although some ofthese (<10%) represent alternatively spliced transcripts from the samegene. Estimates of the number of genes encoded in the C. elegans genomeis on the order of 13,000 genes, so Wormpep12 may be estimated to covergreater than 90% of the C. elegans genome.

[0184] Eukaryotic aspartyl proteases contain a two-domain structure,probably arising from ancestral gene duplication. Each domain containsthe active site motif D(S/T)G located from 20-25 amino acid residuesinto each domain. The retroviral (e.g., HIV protease) or retrotransposonproteases are homodimers of subunits which are homologous to a singleeukaryotic aspartyl protease domain. An AWK script was used to searchthe Wormpep12 database for proteins in which the D(S/T)G motif occurredat least twice. This identified >60 proteins with two DTG or DSG motifs.Visual inspection was used to select proteins in which the position ofthe aspartyl domains was suggestive of a two-domain structure meetingthe criteria described above.

[0185] In addition, the PROSITE eukaryotic and viral aspartyl proteaseactive site pattern PS00141 was used to search Wormpep12 for candidateaspartyl proteases. (Bairoch A., Bucher P., Hofmann K., The PROSITEdatabase: its status in 1997, Nucleic Acids Res. 24:217-221(1997)). Thisgenerated an overlapping set of Wormpep12 sequences. Of these, sevensequences contained two DTG or DSG motifs and the PROSITE aspartylprotease active site pattern. Of these seven, three were found in thesame cosmid clone (F21F8.3, F21F8.4, and F21F8.7) suggesting that theyrepresent a family of proteins that arose by ancestral gene duplication.Two other ORFs with extensive homology to F21F8.3, F21F8.4 and F21F8.7are present in the same gene cluster (F21F8.2 and F21F8.6), however,these contain only a single DTG motif. Exhaustive BLAST searches withthese seven sequences against Wormpep12 failed to reveal additionalcandidate aspartyl proteases in the C. elegans genome containing tworepeats of the DTG or DSG motif.

[0186] BLASTX search with each C. elegans sequence against SWISS-PROT,GenPep and TREMBL revealed that R12H7.2 was the closest worm homologueto the known mammalian aspartyl proteases, and that T18H9.2 was somewhatmore distantly related, while CEASP1, F21F8.3, F21F8.4, and F21F8.7formed a subcluster which had the least sequence homology to themammalian sequences.

[0187] Discussion:

[0188] APP, the presenilins, and p35, the activator of cdk5, all undergointracellular proteolytic processing at sites which conform to thesubstrate specificity of the HIV protease. Dysregulation of a cellularaspartyl protease with the same substrate specificity, might thereforeprovide a unifying mechanism for causation of the plaque and tanglepathologies in AD. Therefore, we sought to identify novel human aspartylproteases. A whole genome scan in C. elegans identified seven openreading frames that adhere to the aspartyl protease profile that we hadidentified. These seven aspartyl proteases probably comprise thecomplete complement of such proteases in a simple, multicellulareukaryote. These include four closely related aspartyl proteases uniqueto C. elegans which probably arose by duplication of an ancestral gene.The other three candidate aspartyl proteases (T18H9.2, R12H7.2 andC11D2.2) were found to have homology to mammalian gene sequences.

EXAMPLE 2 Identification of Novel Human Aspartyl Proteases UsingDatabase Mining by Genome Bridging

[0189] Materials and Methods:

[0190] Computer-assisted analysis of EST databases, cDNA, and predictedpolypeptide sequences:

[0191] Exhaustive homology searches of EST databases with the CEASP1,F21F8.3, F21F8.4, and F21F8.7 sequences failed to reveal any novelmammalian homologues. TBLASTN searches with R12H7.2 showed homology tocathepsin D, cathepsin E, pepsinogen A, pepsinogen C and renin,particularly around the DTG motif within the active site, but alsofailed to identify any additional novel mammalian aspartyl proteases.This indicates that the C. elegans genome probably contains only asingle lysosomal aspartyl protease which in mammals is represented by agene family that arose through duplication and consequent modificationof an ancestral gene.

[0192] TBLASTN searches with T18H9.2, the remaining C. elegans sequence,identified several ESTs which assembled into a contig encoding a novelhuman aspartyl protease (Hu-ASP1). As is described above in Example 1,BLASTX search with the Hu-ASP1 contig against SWISS-PROT revealed thatthe active site motifs in the sequence aligned with the active sites ofother aspartyl proteases. Exhaustive, repetitive rounds of BLASTNsearches against LifeSeq, LifeSeqFL, and the public EST collectionsidentified 102 EST from multiple cDNA libraries that assembled into asingle contig. The 51 sequences in this contig found in public ESTcollections also have been assembled into a single contig (THC213329) byThe Institute for Genome Research (TIGR). The TIGR annotation indicatesthat they failed to find any hits in the database for the contig. Notethat the TIGR contig is the reverse complement of the LifeSeq contigthat we assembled. BLASTN search of Hu-ASP1 against the rat and mouseEST sequences in ZooSeq revealed one homologous EST in each database(Incyte clone 700311523 and IMAGE clone 313341, GenBank accession numberW10530, respectively).

[0193] TBLASTN searches with the assembled DNA sequence for Hu-ASP1against both LifeSeqFL and the public EST databases identified a second,related human sequence (Hu-Asp2) represented by a single EST (2696295).Translation of this partial cDNA sequence reveals a single DTG motifwhich has homology to the active site motif of a bovine aspartylprotease, NM1.

[0194] BLAST searches, contig assemblies and multiple sequencealignments were performed using the bioinformatics tools provided withthe LifeSeq, LifeSeqFL and LifeSeq Assembled databases from Incyte.Predicted protein motifs were identified using either the ProSitedictionary (Motifs in GCG 9) or the Pfam database.

[0195] Full-Length cDNA Cloning of Hu-Asp1

[0196] The open reading frame of C. elegans gene T18H9.2CE was used toquery Incyte LifeSeq and LifeSeq-FL databases and a single electronicassembly referred to as 1863920CE1 was detected. The 5′ most cDNA clonein this contig, 1863920, was obtained from Incyte and completelysequenced on both strands. Translation of the open reading framecontained within clone 1863920 revealed the presence of the duplicatedaspartyl protease active site motif (DTG/DSG) but the 5′ end wasincomplete. The remainder of the Hu-Asp1 coding sequence was determinedby 5′ Marathon RACE analysis using a human placenta Marathon ready cDNAtemplate (Clontech). A 3′-antisense oligonucleotide primer specific forthe 5′ end of clone 1863920 was paired with the 5′-sense primer specificfor the Marathon ready cDNA synthetic adaptor in the PCR. Specific PCRproducts were directly sequenced by cycle sequencing and the resultingsequence assembled with the sequence of clone 1863920 to yield thecomplete coding sequence of Hu-Asp-1 (SEQ ID NO: 1).

[0197] Several interesting features are present in the primary aminoacid sequence of HuAsp1 (FIGS. 1A-1B, SEQ ID NO: 2). The sequencecontains a signal peptide (residues 1-20 in SEQ ID NO: 2), apro-segment, and a catalytic domain containing two copies of theaspartyl protease active site motif (DTG/DSG). The spacing between thefirst and second active site motifs is about 200 residues which shouldcorrespond to the expected size of a single, eukaryotic aspartylprotease domain. More interestingly, the sequence contains a predictedtransmembrane domain (residues 469-492 in SEQ ID NO: 2) near itsC-terminus which suggests that the protease is anchored in the membrane.This feature is not found in any other aspartyl protease.

[0198] Cloning of a Full-Length Hu-Asp-2 cDNAs:

[0199] As is described above in Example 1, genome wide scan of theCaenorhabditis elegans database WormPep12 for putative aspartylproteases and subsequent mining of human EST databases revealed a humanortholog to the C. elegans gene T18H9.2 referred to as Hu-Asp1. Theassembled contig for Hu-Asp1 was used to query for human paralogs usingthe BLAST search tool in human EST databases and a single significantmatch (2696295CE1) with approximately 60% shared identity was found inthe LifeSeq FL database. Similar queries of either gb105PubEST or thefamily of human databases available from TIGR did not identify similarEST clones. cDNA clone 2696295, identified by single pass sequenceanalysis from a human uterus cDNA library, was obtained from Incyte andcompletely sequence on both strands. This clone contained an incomplete1266 bp open-reading frame that encoded a 422 amino acid polypeptide butlacked an initiator ATG on the 5′ end. Inspection of the predictedsequence revealed the presence of the duplicated aspartyl proteaseactive site motif DTG/DSG, separated by 194 amino acid residues.Subsequent queries of later releases of the LifeSeq EST databaseidentified an additional ESTs, sequenced from a human astrocyte cDNAlibrary (4386993), that appeared to contain additional 5′ sequencerelative to clone 2696295. Clone 4386993 was obtained from Incyte andcompletely sequenced on both strands. Comparative analysis of clone4386993 and clone 2696295 confirmed that clone 4386993 extended theopen-reading frame by 31 amino acid residues including two in-frametranslation initiation codons. Despite the presence of the two in-frameATGs, no in-frame stop codon was observed upstream of the ATG indicatingthat the 4386993 may not be full-length. Furthermore, alignment of thesequences of clones 2696295 and 4386993 revealed a 75 base pairinsertion in clone 2696295 relative to clone 4386993 that results in theinsertion of 25 additional amino acid residues in 2696295. The remainderof the Hu-Asp2 coding sequence was determined by 5′ Marathon RACEanalysis using a human hippocampus Marathon ready cDNA template(Clontech). A 3′-antisense oligonucleotide primer specific for theshared 5′-region of clones 2696295 and 4386993 was paired with the5′-sense primer specific for the Marathon ready cDNA synthetic adaptorin the PCR. Specific PCR products were directly sequenced by cyclesequencing and the resulting sequence assembled with the sequence ofclones 2696295 and 4386993 to yield the complete coding sequence ofHu-Asp2(a) (SEQ ID NO: 3) and Hu-Asp2(b) (SEQ ID NO: 5), respectively.

[0200] Several interesting features are present in the primary aminoacid sequence of Hu-Asp2(a) (FIGS. 3A-3B and SEQ ID NO: 4) andHu-Asp-2(b) (FIGS. 2A-2B, SEQ ID NO: 6). Both sequences contain a signalpeptide (residues 1-21 in SEQ ID NO: 4 and SEQ ID NO: 6), a pro-segment,and a catalytic domain containing two copies of the aspartyl proteaseactive site motif (DTG/DSG). The spacing between the first and secondactive site motifs is variable due to the 25 amino acid residue deletionin Hu-Asp-2(b) and consists of 168-versus-194 amino acid residues, forHu-Asp2(b) and Hu-Asp-2(a), respectively. More interestingly, bothsequences contains a predicted transmembrane domain (residues 455-477 inSEQ ID NO: 4 and 430-452 in SEQ ID NO: 6) near their C-termini whichindicates that the protease is anchored in the membrane. This feature isnot found in any other aspartyl protease except Hu-Asp 1.

EXAMPLE 3 Molecular Cloning of Mouse Asp2 cDNA and Genomic DNA

[0201] Cloning and Characterization of Murine Asp2 cDNA.

[0202] The murine ortholog of Hu-Asp2 was cloned using a combination ofcDNA library screening, PCR, and genomic cloning. Approximately 500,000independent clones from a mouse brain cDNA library were screened using a³²P-labeled coding sequence probe prepared from Hu-Asp2. Replicatepositives were subjected to DNA sequence analysis and the longest cDNAcontained the entire 3′ untranslated region and 47 amino acids in thecoding region. PCR amplification of the same mouse brain cDNA librarywith an antisense oligonucleotide primer specific for the 5′-most cDNAsequence determined above and a sense primer specific for the 5′ regionof human Asp2 sequence followed by DNA sequence analysis gave anadditional 980 bp of the coding sequence. The remainder of the 5′sequence of murine Asp-2 was derived from genomic sequence (see below).

[0203] Isolation and Sequence Analysis of the Murine Asp-2 gene.

[0204] A murine EST sequence encoding a portion of the murine Asp2 cDNAwas identified in the GenBank EST database using the BLAST search tooland the Hu-Asp2 coding sequence as the query. Clone g3160898 displayed88% shared identity to the human sequence over 352 bp. Oligonucleotideprimer pairs specific for this region of murine Asp2 were thensynthesized and used to amplify regions of the murine gene. Murinegenomic DNA, derived from strain 129/SvJ, was amplified in the PCR (25cycles) using various primer sets specific for murine Asp2 and theproducts analyzed by agarose gel electrophoresis. The primer set Zoo-1and Zoo-4 amplified a 750 bp fragment that contained approximately 600bp of intron sequence based on comparison to the known cDNA sequence.This primer set was then used to screen a murine BAC library by PCR, asingle genomic clone was isolated and this cloned was confirmed containthe murine Asp2 gene by DNA sequence analysis. Shotgun DNA sequencing ofthis Asp2 genomic clone and comparison to the cDNA sequences of bothHu-Asp2 and the partial murine cDNA sequences defined the full-lengthsequence of murine Asp2 (SEQ ID NO: 7). The predicted amino acidsequence of murine Asp2 (SEQ ID NO: 8) showed 96.4% shared identity (GCGBestFit algorithm) with 18/501 amino acid residue substitutions comparedto the human sequence (FIG. 4). The proteolytic processing of murineAsp2(a) is believed to be analogous to the processing described abovefor human Asp2(a). In addition, a variant lacking amino acid residues190-214 of SEQ ID NO: 8 is specifically contemplated as a murine Asp2(b)polypeptide. All forms of murine Asp2(b) gene and protein are intendedas aspects of the invention.

EXAMPLE 4 Tissue Distribution of Expression of Hu-Asp2 Transcripts

[0205] Materials and Methods:

[0206] The tissue distribution of expression of Hu-Asp-2 was determinedusing multiple tissue Northern blots obtained from Clontech (Palo Alto,Calif.). Incyte clone 2696295 in the vector pINCY was digested tocompletion with EcoRI/NotI and the 1.8 kb cDNA insert purified bypreparative agarose gel electrophoresis. This fragment was radiolabeledto a specific activity >1×10⁹ dpm/μg by random priming in the presenceof [α-³²P-dATP] (>3000 Ci/mmol, Amersham, Arlington Heights, Ill.) andKlenow fragment of DNA polymerase I. Nylon filters containing denatured,size fractionated poly A⁺ RNAs isolated from different human tissueswere hybridized with 2×10⁶ dpm/ml probe in ExpressHyb buffer (Clontech,Palo Alto, Calif.) for 1 hour at 68° C. and washed as recommended by themanufacture. Hybridization signals were visualized by autoradiographyusing BioMax XR film (Kodak, Rochester, N.Y.) with intensifying screensat −80° C.

[0207] Results and Discussion:

[0208] Limited information on the tissue distribution of expression ofHu-Asp-2 transcripts was obtained from database analysis due to therelatively small number of ESTs detected using the methods describedabove (<5). In an effort to gain further information on the expressionof the Hu-Asp2 gene, Northern analysis was employed to determine boththe size(s) and abundance of Hu-Asp2 transcripts. PolyA⁺ RNAs isolatedfrom a series of peripheral tissues and brain regions were displayed ona solid support following separation under denaturing conditions andHu-Asp2 transcripts were visualized by high stringency hybridization toradiolabeled insert from clone 2696295. The 2696295 cDNA probevisualized a constellation of transcripts that migrated with apparentsizes of 3.0 kb, 4.4 kb and 8.0 kb with the latter two transcript beingthe most abundant.

[0209] Across the tissues surveyed, Hu-Asp2 transcripts were mostabundant in pancreas and brain with lower but detectable levels observedin all other tissues examined except thymus and PBLs. Given the relativeabundance of Hu-Asp2 transcripts in brain, the regional expression inbrain regions was also established. A similar constellation oftranscript sizes were detected in all brain regions examined(cerebellum, cerebral cortex, occipital pole, frontal lobe, temporallobe and putamen) with the highest abundance in the medulla and spinalcord.

EXAMPLE 5 Northern Blot Detection of HuAsp-1 and HuAsp-2 Transcripts inHuman Cell Lines

[0210] A variety of human cell lines were tested for their ability toproduce Hu-Asp1 and Asp2 mRNA. Human embryonic kidney (HEK-293) cells,African green monkey (Cos-7) cells, Chinese hamster ovary (CHO) cells,HELA cells, and the neuroblastoma cell line 1M-32 were all obtained fromthe ATCC. Cells were cultured in DME containing 10% FCS except CHO cellswhich were maintained in α-MEM/10% FCS at 37° C. in 5% CO₂ until theywere near confluence. Washed monolayers of cells (3×10⁷) were lysed onthe dishes and poly A⁺ RNA extracted using the Qiagen Oligotex DirectmRNA kit. Samples containing 2 μg of poly A⁺ RNA from each cell linewere fractionated under denaturing conditions (glyoxal-treated),transferred to a solid nylon membrane support by capillary action, andtranscripts visualized by hybridization with random-primed labeled (³²P)coding sequence probes derived from either Hu-Asp1 or Hu-Asp2.Radioactive signals were detected by exposure to X-ray film and by imageanalysis with a PhosphorImager.

[0211] The Hu-Asp1 cDNA probe visualized a similar constellation oftranscripts (2.6 kb and 3.5 kb) that were previously detected is humantissues. The relative abundance determined by quantification of theradioactive signal was Cos-7>HEK 292=HELA>IMR32.

[0212] The Hu-Asp2 cDNA probe also visualized a similar constellation oftranscripts compared to tissue (3.0 kb, 4.4 kb, and 8.0 kb) with thefollowing relative abundance; HEK 293>Cos 7>IMR32>HELA.

EXAMPLE 6 Modification of APP to Increase Aβ Processing for In VitroScreening

[0213] Human cell lines that process Aβ peptide from APP provide a meansto screen in cellular assays for inhibitors of β- and γ-secretase.Production and release of Aβ peptide into the culture supernatant ismonitored by an enzyme-linked immunosorbent assay (EIA). Althoughexpression of APP is widespread and both neural and non-neuronal celllines process and release Aβ peptide, levels of endogenous APPprocessing are low and difficult to detect by EIA. Aβ processing can beincreased by expressing in transformed cell lines mutations of APP thatenhance Aβ processing. We made the serendipitous observation thataddition of two lysine residues to the carboxyl terminus of APP695increases Aβ processing still further. This allowed us to create atransformed cell line that releases Aβ peptide into the culture mediumat the remarkable level of 20,000 pg/ml.

[0214] Materials And Methods

[0215] Materials:

[0216] Human embryonic kidney cell line 293 (HEK293 cells) were obtainedinternally. The vector pIRES-EGFP was purchased from Clontech.Oligonucleotides for mutation using the polymerase chain reaction (PCR)were purchased from Genosys. A plasmid containing human APP695 (SEQ IDNO: 9 and SEQ ID NO: 10) was obtained from Northwestern UniversityMedical School. This was subcloned into pSK (Stratagene) at the Not1site creating the plasmid pAPP695.

[0217] Mutagenesis Protocol:

[0218] The Swedish mutation (K670N, M671L) was introduced into pAPP695using the Stratagene Quick Change Mutagenesis Kit to create the plasmidpAPP695NL (SEQ ID NO: 11 and SEQ ID NO: 12) To introduce a di-lysinemotif at the C-terminus of APP695, the forward primer #276 5′GACTGACCACTCGACCAGGTTC (SEQ ID NO: 47) was used with the “patch” primer#274 5′ CGAATTAAATTCCAGCACACTGGCTACTTCTTGTTCTGCATCTCAAAGAAC (SEQ ID NO:48) and the flanking primer #275 CGAATTAAATTCCAGCACACTGGCTA (SEQ ID NO:49) to modify the 3′ end of the APP695 cDNA (SEQ ID NO: 15 and SEQ IDNO: 16). This also added a BstX1 restriction site that will becompatible with the BstX1 site in the multiple cloning site ofpIRES-EGFP. PCR amplification was performed with a Clontech HF AdvantagecDNA PCR kit using the polymerase mix and buffers supplied by themanufacturer. For “patch” PCR, the patch primer was used at {fraction(1/20)}th the molar concentration of the flanking primers. PCRamplification products were purified using a QIAquick PCR purificationkit (Qiagen). After digestion with restriction enzymes, products wereseparated on 0.8% agarose gels and then excised DNA fragments werepurified using a QIAquick gel extraction kit (Qiagen).

[0219] To reassemble a modified APP695-Sw cDNA, the 5′ Not1-Bgl2fragment of the APP695-Sw cDNA and the 3′ Bgl2-BstX1 APP695 cDNAfragment obtained by PCR were ligated into pIRES-EGFP plasmid DNA openedat the Not1 and BstX1 sites. Ligations were performed for 5 minutes atroom temperature using a Rapid DNA Ligation kit (Boehringer Mannheim)and transformed into Library Efficiency DH5a Competent Cells (GibcoBRLLife Technologies). Bacterial colonies were screened for inserts by PCRamplification using primers #276 and #275. Plasmid DNA was purified formammalian cell transfection using a QIAprep Spin Miniprep kit (Qiagen).The construct obtained was designated pMG125.3 (APPSW-KK, SEQ ID NO: 17and SEQ ID NO: 18).

[0220] Mammalian Cell Transfection:

[0221] HEK293 cells for transfection were grown to 80% confluence inDulbecco's modified Eagle's medium (DMEM) with 10% fetal bovine serum.Cotransfections were performed using LipofectAmine (Gibco-BRL) with 3 μgpMG125.3 DNA and 9 μg pcDNA3.1 DNA per 10×10⁶ cells. Three daysposttransfection, cells were passaged into medium containing G418 at aconcentration of 400 μg/ml. After three days growth in selective medium,cells were sorted by their fluorescence.

[0222] Clonal Selection of 125.3 Cells by FACS:

[0223] Cell samples were analyzed on an EPICS Elite ESP flow cytometer(Coulter, Hialeah, Fla.) equipped with a 488 nm excitation line suppliedby an air-cooled argon laser. EGFP emission was measured through a 525nm band-pass filter and fluorescence intensity was displayed on a4-decade log scale after gating on viable cells as determined by forwardand right angle light scatter. Single green cells were separated intoeach well of one 96 well plate containing growth medium without G418.After a four day recovery period, G418 was added to the medium to afinal concentration of 400 μg/ml. After selection, 32% of the wellscontained expanding clones. Wells with clones were expanded from the 96well plate to a 24 well plate and then a 6 well plate with the fastestgrowing colonies chosen for expansion at each passage. The final cellline selected was the fastest growing of the final six passaged. Thisclone, designated 125.3, has been maintained in G418 at 400 μg/ml withpassage every four days into fresh medium. No loss of Aβ production ofEGFP fluorescence has been seen over 23 passages.

[0224] Aβ EIA Analysis (Double Antibody Sandwich ELISA for hAβ 1-40/42):

[0225] Cell culture supernatants harvested 48 hours after transfectionwere analyzed in a standard AP EIA as follows. Human Aβ 1-40 or 1-42 wasmeasured using monoclonal antibody (mAb) 6E10 (Senetek, St. Louis, Mo.)and biotinylated rabbit antiserum 162 or 164 (New York State Institutefor Basic Research, Staten Island, N.Y.) in a double antibody sandwichELISA. The capture antibody 6E10 is specific to an epitope present onthe N-terminal amino acid residues 1-16 of hAβ. The conjugated detectingantibodies 162 and 164 are specific for hAβ 1-40 and 1-42, respectively.Briefly, a Nunc Maxisorp 96 well immunoplate was coated with 100 μl/wellof mAb 6E10 (5 μg/ml) diluted in 0.1M carbonate-bicarbonate buffer, pH9.6 and incubated at 4° C. overnight. After washing the plate 3× with0.01 M DPBS (Modified Dulbecco's Phosphate Buffered Saline (0.008Msodium phosphate, 0.002M potassium phosphate, 0.14M sodium chloride,0.01M potassium chloride, pH 7.4) from Pierce, Rockford, Ill.)containing 0.05% of Tween-20 (DPBST), the plate was blocked for 60minutes with 200 μl of 10% normal sheep serum (Sigma) in 0.01M DPBS toavoid non-specific binding. Human Aβ 1-40 or 1-42 standards 100 μl/well(Bachem, Torrance, Calif.) diluted, from a 1 mg/ml stock solution inDMSO, in culture medium was added after washing the plate, as well as100 μl/well of sample, e.g., conditioned medium of transfected cells.

[0226] The plate was incubated for 2 hours at room temperature and 4° C.overnight. The next day, after washing the plate, 100 μl/wellbiotinylated rabbit antiserum 162 1:400 or 164 1:50 diluted inDPBST+0.5% BSA was added and incubated at room temperature for 1 hour,15 minutes. Following washes, 100 μl/well neutravidin-horseradishperoxidase (Pierce, Rockford, Ill.) diluted 1:10,000 in DPBST wasapplied and incubated for 1 hour at room temperature. After the lastwashes 100 μl/well of o-phenylnediamine dihydrochloride (SigmaChemicals, St. Louis, Mo.) in 50 mM citric acid/100 mM sodium phosphatebuffer (Sigma Chemicals, St. Louis, Mo.), pH 5.0, was added as substrateand the color development was monitored at 450 nm in a kineticmicroplate reader for 20 minutes using Soft max Pro software. Allstandards and samples were run in triplicates. The samples withabsorbance values falling within the standard curve were extrapolatedfrom the standard curves using Soft max Pro software and expressed inpg/ml culture medium.

[0227] Results:

[0228] Addition of two lysine residues to the carboxyl terminus ofAPP695 greatly increases Aβ processing in HEK293 cells as shown bytransient expression (Table 1). Addition of the di-lysine motif toAPP695 increases Aβ processing to that seen with the APP695 containingthe Swedish mutation. Combining the di-lysine motif with the Swedishmutation further increases processing by an additional 2.8 fold.

[0229] Cotransformation of HEK293 cells with pMG125.3 and pcDNA3.1allowed dual selection of transformed cells for G418 resistance and highlevel expression of EGFP. After clonal selection by FACS, the cell lineobtained, produces a remarkable 20,000 pg Aβ peptide per ml of culturemedium after growth for 36 hours in 24 well plates. Production of Aβpeptide under various growth conditions is summarized in Table 2. TABLE1 Release of Aβ peptide into the culture medium 48 hours after transienttransfection of HEK293 cells with the indicated vectors containingwildtype or modified APP. Values tabulated are mean + SD and P-value forpairwise comparison using Student's t-test assuming unequal variances.Aβ 1-40 peptide APP Construct (pg/ml) Fold Increase P-value pIRES-EGFPvector 147 + 28 1.0 wt APP695 (142.3) 194 + 15 1.3 0.051 wt APP695-KK(124.1) 424 + 34 2.8 3 × 10⁻⁵ APP695-Sw (143.3) 457 + 65 3.1 2 × 10⁻³APP695-SwKK (125.3) 1308 + 98  8.9 3 × 10⁻⁴

[0230] TABLE 2 Release of Aβ peptide from HEK125.3 cells under variousgrowth conditions. Volume of Duration of Aβ 1-40 Aβ 1-42 Type of CulturePlate Medium Culture (pg/ml) (pg/ml) 24 well plate 400 μl 36 hr 28,0361,439

EXAMPLE 7 Antisense Oligomer Inhibition of Abeta Processing in HEK125.3Cells

[0231] The sequences of Hu-Asp1 and Hu-Asp2 were provided to Sequitur,Inc (Natick, Mass.) for selection of targeted sequences and design of2nd generation chimeric antisense oligomers using prorietary technology(Sequitur Ver. D Pat pending #3002). Antisense oligomers Lot# S644,S645, S646 and S647 were targeted against Asp1. Antisense oligomers Lot#S648, S649, S650 and S651 were targeted against Asp2. Control antisenseoligomers Lot# S652, S653, S655, and S674 were targeted against anirrelevant gene and antisense oligomers Lot #S656, S657, S658, and S659were targeted against a second irrelevant gene.

[0232] For transfection with the antisense oligomers, HEK125.3 cellswere grown to about 50% confluence in 6 well plates in Minimal EssentialMedium (MEM) supplemented with 10% fetal calf serum. A stock solution ofoligofectin G (Sequitur Inc., Natick, Mass.) at 2 mg/ml was diluted to50 μg/ml in serum free MEM. Separately, the antisense oligomer stocksolution at 100 μM was diluted to 800 nM in Opti-MEM (GIBCO-BRL, GrandIsland, N.Y.). The diluted stocks of oligofectin G and antisenseoligomer were then mixed at a ratio of 1:1 and incubated at roomtemperature. After 15 minutes incubation, the reagent was diluted 10fold into MEM containing 10% fetal calf serum and 2 ml was added to eachwell of the 6 well plate after first removing the old medium. Aftertransfection, cells were grown in the continual presence of theoligofectin G/antisense oligomer. To monitor Aβ peptide release, 400 μlof conditioned medium was removed periodically from the culture well andreplaced with fresh medium beginning 24 hours after transfection. Aβpeptides in the conditioned medium were assayed via immunoprecipitationand Western blotting Data reported are from culture supernatantsharvested 48 hours after transfection.

[0233] The 16 different antisense oligomers obtained from Sequitur Inc.were transfected separately into HEK125.3 cells to determine theiraffect on Aβ peptide processing. Only antisense oligomers targetedagainst Asp2 significantly reduced Abeta processing by HEK125.3 cells.Both Aβ (1-40) and Aβ (1-42) were inhibited by the same degree. In Table3, percent inhibition is calculated with respect to untransfected cells.Antisense oligomer reagents giving greater than 50% inhibition aremarked with an asterisk. For ASP2, 4 of 4 antisense oligomers gavegreater than 50% inhibition with an average inhibition of 62% for Aβ1-40 processing and 60% for Aβ 1-42 processing. TABLE 3 Inhibition of Aβpeptide release from HEK 125.3 cells treated with antisense oligomers.Gene Antisense Targeted Oligomer Abeta (1-40) Abeta (1-42) Asp2-1 S648 71%*  67%* Asp2-2 S649  83%*  76%* Asp2-3 S650  46%*  50%* Asp2-4 S651 47%*  46%* Con1-1 S652 13% 18% Con1-2 S653 35% 30% Con1-3 S655  9% 18%Con1-4 S674 29% 18% Con2-1 S656 12% 18% Con2-2 S657 16% 19% Con2-3 S658 8% 35% Con2-4 S659  3% 18%

[0234] Since HEK293 cells derive from kidney, the experiment wasextended to human IMR-32 neuroblastoma cells which express all three APPisoforms and which release Aβ peptides into conditioned medium atmeasurable levels. (See Neill et al., J. NeuroSci. Res., (1994) 39:482-93; and Asami-Odaka et al., Biochem., (1995) 34:10272-8.)Essentially identical results were obtained in the neuroblastoma cellsas the HEK293 cells. As shown in Table 3B, the pair of Asp2 antisenseoligomers reduced Asp2 mRNA by roughly one-half, while the pair ofreverse control oligomers lacked this effect (Table 3B). TABLE 3BReduction of Aβ40 and Aβ42 in human neuroblastoma IMR-32 cells and mouseneuroblastoma Neuro-2A cells treated with Asp2 antisense and controloligomers as indicated. Oligomers were transfected in quadruplicatecultures. Values tabulated are normalized against cultures treated witholigofectin-G ™ only (mean + SD, ** p < 0.001 compared to reversecontrol oligomer). IMR-32 cells Neuro-2A cells Asp2 mRNA Aβ40 Aβ42 Aβ40Aβ42 Asp2-1A −75% −49 + 2%** −42 + 14%** −70 + 7%** −67 + 2%** Asp2-1R0.16  −0 + 3% 21.26  −9 + 15% 1.05 Asp2-2A −39% −43 + 3%** −44 + 18%**−61 + 12%** −61 + 12%** Asp2-2R 0.47 12.2 19.22 6.15  −8 + 10%

[0235] Together with the reduction in Asp2 mRNA there was a concomitantreduction in the release of Aβ40 and Aβ42 peptides into the conditionedmedium. Thus, Asp2 functions directly or indirectly in a human kidneyand a human neuroblastoma cell line to facilitate the processing of APPinto Aβ peptides. Molecular cloning of the mouse Asp2 cDNA revealed ahigh degree of homology to human (>96% amino acid identity, see Example3), and indeed, complete nucleotide identity at the sites targeted bythe Asp2-1A and Asp2-2A antisense oligomers. Similar results wereobtained in mouse Neuro-2a cells engineered to express APP-Sw-KK. TheAsp2 antisense oligomers reduced release of Aβ peptides into the mediumwhile the reverse control oligomers did not (Table 3B). Thus, the threeantisense experiments with HEK293, IMR-32 and Neuro-2a cells indicatethat Asp2 acts directly or indirectly to facilitate AP processing inboth somatic and neural cell lines.

EXAMPLE 8 Demonstration of Hu-Asp2 β-Secretase Activity in CulturedCells

[0236] Several mutations in APP associated with early onset Alzheimer'sdisease have been shown to alter Aβ peptide processing. These flank theN- and C-terminal cleavage sites that release Aβ from APP. Thesecleavage sites are referred to as the β-secretase and γ-secretasecleavage sites, respectively. Cleavage of APP at the β-secretase sitecreates a C-terminal fragment of APP containing 99 amino acids of 11,145daltons molecular weight. The Swedish KM→NL mutation immediatelyupstream of the β-secretase cleavage site causes a general increase inproduction of both the 1-40 and 1-42 amino acid forms of Aβ peptide. TheLondon VF mutation (V717→F in the APP770 isoform) has little effect ontotal Aβ peptide production, but appears to preferentially increase thepercentage of the longer 1-42 amino acid form of Aβ peptide by affectingthe choice of β-secretase cleavage site used during APP processing.Thus, we sought to determine if these mutations altered the amount andtype of Aβ peptide produced by cultured cells cotransfected with aconstruct directing expression of Hu-Asp2.

[0237] Two experiments were performed which demonstrate Hu-Asp2β-secretase activity in cultured cells. In the first experiment,treatment of HEK125.3 cells with antisense oligomers directed againstHu-Asp2 transcripts as described in Example 7 was found to decrease theamount of the C-terminal fragment of APP created by β-secretase cleavage(CTF99) (FIG. 9). This shows that Hu-Asp2 acts directly or indirectly tofacilitate β-secretase cleavage. In the second experiment, increasedexpression of Hu-Asp2 in transfected mouse Neuro2A cells is shown toincrease accumulation of the CTF99 β-secretase cleavage fragment (FIG.10). This increase is seen most easily when a mutant APP-KK clonecontaining a C-terminal di-lysine motif is used for transfection. Afurther increase is seen when Hu-Asp2 is cotransfected with APP-Sw-KKcontaining the Swedish mutation KM→NL. The Swedish mutation is known toincrease cleavage of APP by the β-secretase.

[0238] A second set of experiments demonstrate Hu-Asp2 facilitatesγ-secretase activity in cotransfection experiments with human embryonickidney HEK293 cells. Cotransfection of Hu-Asp2 with an APP-KK clonegreatly increases production and release of soluble Aβ 1-40 and Aβ 1-42peptides from HEK293 cells. There is a proportionately greater increasein the release of Aβ 1-42. A further increase in production of Aβ 1-42is seen when Hu-Asp2 is cotransfected with APP-VF (SEQ ID NO: 13 and SEQID NO: 14) or APP-VF-KK SEQ ID NO: 19 and SEQ ID NO: 20) clonescontaining the London mutation V717→F. The V717→F mutation is known toalter cleavage specificity of the APP γ-secretase such that thepreference for cleavage at the Aβ42 site is increased. Thus, Asp2 actsdirectly or indirectly to facilitate γ-secretase processing of APP atthe β42 cleavage site.

[0239] Materials

[0240] Antibodies 6E10 and 4G8 were purchased from Senetek (St. Louis,Mo.). Antibody 369 was obtained from the laboratory of Paul Greengard atthe Rockefeller University. Antibody C8 was obtained from the laboratoryof Dennis Selkoe at the Harvard Medical School and Brigham and Women'sHospital.

[0241] APP Constructs used

[0242] The APP constructs used for transfection experiments comprisedthe following:

[0243] APP: wild-type APP695 (SEQ ID NOS: 9 & 10)

[0244] APP-Sw: APP695 containing the Swedish KM→NL mutation (SEQ ID NOS:11 & 12, wherein the lysine (K) at residue 595 of APP695 is changed toasparagine (N) and the methionine (M) at residue 596 of APP695 ischanged to leucine (L).),

[0245] APP-VF: APP695 containing the London V→F mutation (SEQ ID NOS: 13& 14) (Affected residue 717 of the APP770 isoform corresponds withresidue 642 of the APP695 isoform. Thus, APP VF as set in SEQ ID NO: 14comprises the APP695 sequence, wherein the valine (V) at residue 642 ischanged to phenylalanine (F).)

[0246] APP-KK: APP695 containing a C-terminal KK motif (SEQ ID NOS:. 15& 16),

[0247] APP-Sw-KK: APP695-Sw containing a C-terminal KK motif (SEQ IDNOS: 17 & 18),

[0248] APP-VF-KK: APP695-VF containing a C-terminal KK motif (SEQ IDNOS: 19 & 20).

[0249] These were inserted into the vector pIRES-EGFP (Clontech, PaloAlto Calif.) between the Not1 and BstX1 sites using appropriate linkersequences introduced by PCR.

[0250] Transfection of Antisense Oligomers or Plasmid DNA constructs inHEK293 Cells,

[0251] HEK125.3 cells and Neuro-2A cells, Human embryonic kidney HEK293cells and mouse Neuro-2a cells were transfected with expressionconstructs using the Lipofectamine Plus reagent from Gibco/BRL. Cellswere seeded in 24 well tissue culture plates to a density of 70-80%confluence. Four wells per plate were transfected with 2 μg DNA (3:1,APP:cotransfectant), 8 μl Plus reagent, and 4 μl Lipofectamine inOptiMEM. OptiMEM was added to a total volume of 1 ml, distributed 200 μlper well and incubated 3 hours. Care was taken to hold constant theratios of the two plasmids used for cotransfection as well as the totalamount of DNA used in the transfection. The transfection media wasreplaced with DMEM, 10% FBS, NaPyruvate, with antibiotic/antimycotic andthe cells were incubated under normal conditions (37° C., 5% CO₂) for 48hours. The conditioned media were removed to polypropylene tubes andstored at −80° C. until assayed for the content of Aβ 1-40 and Aβ1-42 byEIA as described in the preceding examples. Transfection of antisenseoligomers into HEK125.3 cells was as described in Example 7.

[0252] Preparation of Cell Extracts, Western Blot Protocol

[0253] Cells were harvested after being transfected with plasmid DNA forabout 60 hours. First, cells were transferred to 15-ml conical tube fromthe plate and centrifuged at 1,500 rpm for 5 minutes to remove themedium. The cell pellets were washed once with PBS. We then lysed thecells with lysis buffer (10 mM HEPES, pH 7.9, 150 mM NaCl, 10% glycerol,1 mM EGTA, 1 mM EDTA, 0.1 mM sodium vanadate and 1% NP-40). The lysedcell mixtures were centrifuged at 5000 rpm and the supernatant wasstored at −20° C. as the cell extracts. Equal amounts of extracts fromHEK125.3 cells transfected with the Asp2 antisense oligomers andcontrols were precipitated with antibody 369 that recognizes theC-terminus of APP and then CTF99 was detected in the immunoprecipitatewith antibody 6E10. The experiment was repeated using C8, a secondprecipitating antibody that also recognizes the C-terminus of APP. ForWestern blot of extracts from mouse Neuro-2a cells cotransfected withHu-Asp2 and APP-KK, APP-Sw-KK, APP-VF-KK or APP-VF, equal amounts ofcell extracts were electrophoresed through 4-10% or 10-20% Tricineugradient gels (NOVEX, San Diego, Calif.). Full length APP and the CTF99β-secretase product were detected with antibody 6E 10.

[0254] Results

[0255] Transfection of HEK125.3 cells with Asp2-1 or Asp2-2 antisenseoligomers reduces production of the CTF β-secretase product incomparison to cells similarly transfected with control oligomers havingthe reverse sequence (Asp2-1 reverse & Asp2-2 reverse), see FIG. 9.Correspondingly, cotransfection of Hu-Asp2 into mouse Neuro-2a cellswith the APP-KK construct increased the formation of CTF99. (See FIG.10.) This was further increased if Hu-Asp2 was coexpressed withAPP-Sw-KK, a mutant form of APP containing the Swedish KM→NL mutationthat increases β-secretase processing.

[0256] Effects of Asp2 on the production of Ab peptides fromendogenously expressed APP isoforms were assessed in HEK293 cellstransfected with a construct expressing Asp2 or with the empty vectorafter selection of transformants with the antibiotic G418. Aβ40production was increased in cells transformed with the Asp2 construct incomparison to those transformed with the empty vector DNA. Aβ40 levelsin conditioned medium collected from the Asp2 transformed and controlcultures was 424±45 pg/ml and 113±58 pg/ml, respectively (p<0.001). Aβ42release was below the limit of detection by the EIA, while the releaseof sAPPα was unaffected, 112±8 ng/ml versus 111+40 ng/ml. This furtherindicates that Asp2 acts directly or indirectly to facilitate theprocessing and release of Aβ from endogenously expressed APP.

[0257] Co-transfection of Hu-Asp2 with APP has little effect on Aβ40production but increases Aβ42 production above background (Table 4).Addition of the di-lysine motif to the C-terminus of APP increases Aβpeptide processing about two fold, although Aβ40 and Aβ42 productionremain quite low (352 pg/ml and 21 pg/ml, respectively). Cotransfectionof Asp2 with APP-KK further increases both Aβ40 and Aβ42 production.

[0258] The APP V717→F mutation has been shown to increase γ-secretaseprocessing at the Aβ42 cleavage site. Cotransfection of Hu-Asp2 with theAPP-VF or APP-VF-KK constructs increased Aβ42 production (a two foldincrease with APP-VF and a four-fold increase with APP-VF-KK, Table 4),but had mixed effects on Aβ40 production (a slight decrease with APP-VF,and a two fold increase with APP-VF-KK in comparison to the pcDNAcotransfection control. Thus, the effect of Asp2 on Aβ42 production wasproportionately greater leading to an increase in the ratio ofAβ42/total Ab. Indeed, the ratio of Aβ42/total AP reaches a very highvalue of 42% in HEK293 cells cotransfected with Hu-Asp2 and APP-VF-KK.TABLE 4 Results of cotransfecting Hu-Asp2 or pcDNA plasmid DNA withvarious APP constructs containing the V717→F mutation that modifiesγ-secretase processing. Cotransfection with Asp2 consistently increasesthe ratio of Aβ42/total Aβ. Values tabulated are Aβ peptide pg/ml. pcDNACotransfection Asp2 Cotransfection Aβ40 Aβ42 Aβ42/Total Aβ40 Aβ42Aβ42/Total APP 192 ± 18 <4    <2%  188 ± 40  8 ± 10  3.9% APP-VF 118 ±15 15 ± 19 11.5%  85 ± 7  24 ± 12 22.4% APP-KK 352 ± 24 21 ± 6  5.5%1062 ± 101 226 ± 49 17.5% APP-VF-KK 230 ± 31 88 ± 24 27.7%  491 ± 35 355± 36   42%

EXAMPLE 9 Bacterial Expression of Human Asp2(a)

[0259] Expression of Recombinant Hu-Asp2(a) in E. coli.

[0260] Hu-Asp2(a) can be expressed in E. coli after addition ofN-terminal sequences such as a T7 tag (SEQ ID NOS: 21 and 22) or a T7tag followed by a caspase 8 leader sequence (SEQ ID NOS: 23 and 24).Alternatively, reduction of the GC content of the 5′ sequence by sitedirected mutagenesis can be used to increase the yield of Hu-Asp2 (SEQID NOS: 25 and 26). In addition, Asp2(a) can be engineered with aproteolytic cleavage site (SEQ ID NOS: 27 and 28). To produce a solubleprotein after expression and refolding, deletion of the transmembranedomain and cytoplasmic tail, or deletion of the membrane proximalregion, transmembrane domain, and cytoplasmic tail is preferred. Anymaterials (vectors, host cells, etc.) and methods described herein toexpress Hu-Asp2(a) should in principle be equally effective forexpression of Hu-Asp2(b).

[0261] Methods

[0262] PCR with primers containing appropriate linker sequences was usedto assemble fusions of Asp2(a) coding sequence with N-terminal sequencemodifications including a T7 tag (SEQ ID NOS: 21 and 22) or a T7-caspase8 leader (SEQ ID NOS: 23 and 24). These constructs were cloned into theexpression vector pet23a(+) [Novagen] in which a T7 promoter directsexpression of a T7 tag preceding a sequence of multiple cloning sites.To clone Hu-Asp2 sequences behind the T7 leader of pet23a+, thefollowing oligonucleotides were used for amplification of the selectedHu-Asp2(a) sequence: #553=GTGGATCCACCCAGCACGGCATCCGGCTG (SEQ ID NO: 35),#554=GAAAGCTTTCATGACTCATCTGTCTGTGGAATGTTG (SEQ ID NO: 36) which placedBamHI and HindIII sites flanking the 5′ and 3′ ends of the insert,respectively. The Asp2(a) sequence was amplified from the full lengthAsp2(a) cDNA cloned into pcDNA3.1 using the Advantage-GC cDNA PCR(Clontech) following the manufacturer's supplied protocol usingannealing & extension at 68° C. in a two-step PCR cycle for 25 cycles.The insert and vector were cut with BamHI and HindIII, purified byelectrophoresis through an agarose gel, then ligated using the Rapid DNALigation kit (Boerhinger Mannheim). The ligation reaction was used totransform the E. coli strain JM109 (Promega) and colonies were pickedfor the purification of plasmid (Qiagen,Qiaprep minispin) and DNAsequence analysis. For inducible expression using induction withisopropyl b-D-thiogalactopyranoside (IPTG), the expression vector wastransferred into E. coli strain BL21 (Stratagene). Bacterial cultureswere grown in LB broth in the presence of ampicillin at 100 μg/ml, andinduced in log phase growth at an OD600 of 0.6-1.0 with 1 mM IPTG for 4hour at 37° C. The cell pellet was harvested by centrifugation.

[0263] To clone Hu-Asp2 sequences behind the T7 tag and caspase leader(SEQ ID NOS: 23 and 24), the construct created above containing theT7-Hu-Asp2 sequence (SEQ ID NOS: 21 and 22) was opened at the BamHIsite, and then the phosphorylated caspase 8 leader oligonucleotides#559=GATCGATGACTATCTCTGACTCTCCGCGTGAACAGGACG (SEQ ID NO: 37),#560=GATCCGTCCTGTTCACGCGGAGAGTCAGAGATAGTCATC (SEQ ID NO: 38) wereannealed and ligated to the vector DNA. The 5′ overhang for each set ofoligonucleotides was designed such that it allowed ligation into theBamHI site but not subsequent digestion with BamHI. The ligationreaction was transformed into JM109 as above for analysis of proteinexpression after transfer to E. coli strain BL21.

[0264] In order to reduce the GC content of the 5′ terminus of asp2(a),a pair of antiparallel oligos were designed to change degenerate codonbases in 15 amino acid positions from G/C to A/T (SEQ ID NOS: 25 and26). The new nucleotide sequence at the 5′ end of asp2 did not changethe encoded amino acid and was chosen to optimize E. coli expression.The sequence of the sense linker is 5′CGGCATCCGGCTGCCCCTGCGTAGCGGTCTGGGTGGTGCTCCACTGGGTCTGCGTCTGCCCCGGGAGACCGACGAA G 3′ (SEQ ID NO: 39). The sequence of theantisense linker is: 5′CTTCGTCGGTCTCCCGGGGCAGACGCAGACCCAGTGGAGCACCACCCAGACCGCTACGCAGGGGCAGCCGGATGCCG 3′ (SEQ ID NO: 40). After annealing thephosphorylated linkers together in 0.1M NaCl-10 mM Tris, pH 7.4 theywere ligated into unique Cla I and Sma I sites in Hu-Asp2 in the vectorpTAC. For inducible expression using induction with isopropylb-D-thiogalactopyranoside (IPTG), bacterial cultures were grown in LBbroth in the presence of ampicillin at 100 μg/ml, and induced in logphase growth at an OD600 of 0.6-1.0 with 1 mM IPTG for 4 hour at 37° C.The cell pellet was harvested by centrifugation.

[0265] To create a vector in which the leader sequences can be removedby limited proteolysis with caspase 8 such that this liberates a Hu-Asp2polypeptide beginning with the N-terminal sequence GSFV (SEQ ID NOS: 27and 28), the following procedure was followed. Two phosphorylatedoligonucleotides containing the caspase 8 cleavage site IETD, #571=5′GATCGATGACTATCTCTGACTCTCCGCTGGACTCTGGTATCGAAACCGACG (SEQ ID NO: 41) and#572=GATCCGTCGGTTTCGATACCAGAGTCCAGCGGAGAGTCAGAGATAGTCAT C (SEQ ID NO:42) were annealed and ligated into pET23a+ that had been opened withBamHI. After transformation into JM109, the purified vector DNA wasrecovered and orientation of the insert was confirmed by DNA sequenceanalysis.

[0266] The following oligonucleotides were used for amplification of theselected Hu-Asp2(a) sequence: #573 = 5′AAGGATCCTTTGTGGAGATGGTGGACAACCTG,(SEQ ID NO: 43) #554 = GAAAGCTTTCATGACTCATCTGTCTGTGGAATGTTG (SEQ ID NO:44)

[0267] which placed BamHI and HindIII sites flanking the 5′ and 3′ endsof the insert, respectively. The Hu-Asp2(a) sequence was amplified fromthe full length Hu-Asp2(a) cDNA cloned into pcDNA3.1 using theAdvantage-GC cDNA PCR (Clontech) following the manufacturer's suppliedprotocol using annealing & extension at 68° C. in a two-step PCR cyclefor 25 cycles. The insert and vector were cut with BamHI and HindIII,purified by electrophoresis through an agarose gel, then ligated usingthe Rapid DNA Ligation kit (Boerhinger Mannheim). The ligation reactionwas used to transform the E. coli strain JM109 (Promega) and colonieswere picked for the purification of plasmid (Qiagen,Qiaprep minispin)and DNA sequence analysis. For inducible expression using induction withisopropyl b-D-thiogalactopyranoside (IPTG), the expression vector wastransferred into E. coli strain BL21 (Statagene). Bacterial cultureswere grown in LB broth in the presence of ampicillin at 100 μg/ml, andinduced in log phase growth at an OD600 of 0.6-1.0 with 1 mM IPTG for 4hour at 37° C. The cell pellet was harvested by centrifugation.

[0268] To assist purification, a 6-His tag can be introduced into any ofthe above constructs following the T7 leader by opening the construct atthe BamHI site and then ligating in the annealed, phosphorylatedoligonucleotides containing the six histidine sequence#565=GATCGCATCATCACCATCACCATG (SEQ ID NO: 45),#566=GATCCATGGTGATGGTGATGATGC (SEQ ID NO: 46). The 5′ overhang for eachset of oligonucleotides was designed such that it allowed ligation intothe BamHI site but not subsequent digestion with BamHI.

[0269] Preparation of Bacterial Pellet:

[0270] 36.34 g of bacterial pellet representing 10.8 L of growth wasdispersed into a total volume of 200 ml using a 20 mm tissue homogenizerprobe at 3000 to 5000 rpm in 2M KCl, 0.1M Tris, 0.05M EDTA, 1 mM DTT.The conductivity adjusted to about 193 mMhos with water. After thepellet was dispersed, an additional amount of the KCl solution wasadded, bringing the total volume to 500 ml. This suspension washomogenized further for about 3 minutes at 5000 rpm using the sameprobe. The mixture was then passed through a Rannie high-pressurehomogenizer at 10,000 psi.

[0271] In all cases, the pellet material was carried forward, while thesoluble fraction was discarded. The resultant solution was centrifugedin a GSA rotor for 1 hour at 12,500 rpm. The pellet was resuspended inthe same solution (without the DTT) using the same tissue homogenizerprobe at 2,000 rpm. After homogenizing for 5 minutes at 3000 rpm, thevolume was adjusted to 500 ml with the same solution, and spun for 1hour at 12,500 rpm. The pellet was then resuspended as before, but thistime the final volume was adjusted to 1.5 L with the same solution priorto homogenizing for 5 minutes. After centrifuging at the same speed for30 minutes, this procedure was repeated. The pellet was then resuspendedinto about 150 ml of cold water, pooling the pellets from the sixcentrifuge tubes used in the GSA rotor. The pellet has homogenized for 5minutes at 3,000 rpm, volume adjusted to 250 ml with cold water, thenspun for 30 minutes. Weight of the resultant pellet was 17.75 g.

[0272] Summary: Lysis of bacterial pellet in KCl solution, followed bycentrifugation in a GSA rotor was used to initially prepare the pellet.The same solution was then used an additional three times forresuspension/homogenization. A final water wash/homogenization was thenperformed to remove excess KCl and EDTA.

[0273] Solublization of Recombinant Hu-Asp2(a):

[0274] A ratio of 9-10 ml/gram of pellet was utilized for solubilizingthe rHuAsp2 L from the pellet previously described. 17.75 g of pelletwas thawed, and 150 ml of 8M guanidine HCl, 5 mM βME, 0.1% DEA, wasadded. 3M Tris was used to titrate the pH to 8.6. The pellet wasinitially resuspended into the guanidine solution using a 20 mm tissuehomogenizer probe at 1000 rpm. The mixture was then stirred at 4° C. for1 hour prior to centrifugation at 12,500 rpm for 1 hour in GSA rotor.The resultant supernatant was then centrifuged for 30 minutes at40,000×g in an SS-34 rotor. The final supernatant was then stored at−20° C., except for 50 ml.

[0275] Immobilized Nickel Affinity Chromatography of SolubilizedRecombinant Hu-Asp2(a):

[0276] The following solutions were utilized:

[0277] A) 6M Guanidine HCl, 0.1M NaP, pH 8.0, 0.01M Tris, 5 mM βME, 0.5mM Imidazole

[0278] A′) 6M Urea, 20 mM NaP, pH 6.80, 50 mM NaCl

[0279] B′) 6M Urea, 20 mM NaP, pH 6.20, 50 mM NaCl, 12 mM Imidazole

[0280] C′) 6M Urea, 20 mM NaP, pH 6.80, 50 mM NaCl, 300 mM Imidazole

[0281] Note: Buffers A′ and C′ were mixed at the appropriate ratios togive intermediate concentrations of Imidazole.

[0282] The 50 ml of solubilized material was combined with 50 ml ofbuffer A prior to adding to 100-125 ml Qiagen Ni-NTA SuperFlow(pre-equilibrated with buffer A) in a 5×10 cm Bio-Rad econo column. Thiswas shaken gently overnight at 4° C. in the cold room.

[0283] Chromatography Steps:

[0284] Drained the resultant flow through.

[0285] Washed with 50 ml buffer A (collecting into flow throughfraction)

[0286] Washed with 250 ml buffer A (wash 1)

[0287] Washed with 250 ml buffer A (wash 2)

[0288] Washed with 250 ml buffer A′

[0289] Washed with 250 ml buffer B′

[0290] Washed with 250 ml buffer A′

[0291] Eluted with 250 ml 75 mM Imidazole

[0292] Eluted with 250 ml 150 mM Imidazole (150-1)

[0293] Eluted with 250 ml 150 mM Imidazole (150-2)

[0294] Eluted with 250 ml 300 mM Imidazole (300-1)

[0295] Eluted with 250 ml 300 mM Imidazole (300-2)

[0296] Eluted with 250 ml 300 mM Imidazole (300-3)

[0297] Chromatography Results:

[0298] The Hu-Asp(a) eluted at 75 mM Imidazole through 300 mM Imidazole.The 75 mM fraction, as well as the first 150 mM Imidazole (150-1)fraction contained contaminating proteins as visualized on CoomassieBlue stained gels. Therefore, fractions 150-2 and 300-1 will be utilizedfor refolding experiments since they contained the greatest amount ofprotein as visualized on a Coomassie Blue stained gel.

[0299] Refolding Experiments of Recombinant Hu-Asp2(a):

[0300] Experiment 1:

[0301] Forty ml of 150-2 was spiked with 1M DTT, 3M Tris, pH 7.4 and DEAto a final concentration of 6 mM, 50 mM, and 0.1% respectively. This wasdiluted suddenly (while stirring) with 200 ml of (4° C.) cold 20 mM NaP,pH 6.8, 150 mM NaCl. This dilution gave a final Urea concentration of1M. This solution remained clear, even if allowed to set open to the airat room temperature (RT) or at 4° C.

[0302] After setting open to the air for 4-5 hours at 4° C., thissolution was then dialyzed overnight against 20 mM NaP, pH 7.4, 150 mMNaCl, 20% glycerol. This method effectively removes the urea in thesolution without precipitation of the protein.

[0303] Experiment 2:

[0304] Some of the 150-2 eluate was concentrated 2× on an AmiconCentriprep, 10,000 MWCO, then treated as in Experiment 1. This materialalso stayed in solution, with no visible precipitation.

[0305] Experiment 3:

[0306] 89 ml of the 150-2 eluate was spiked with 1M DTT, 3M Tris, pH 7.4and DEA to a final concentration of 6 mM, 50 mM, and 0.1% respectively.This was diluted suddenly (while stirring) with. 445 ml of (4° C.) cold20 mM NaP, pH 6.8, 150 mM NaCl. This solution appeared clear, with noapparent precipitation. The solution was removed to RT and stirred for10 minutes prior to adding MEA to a final concentration of 0.1 mM. Thiswas stirred slowly at RT for 1 hour. Cystamine and CuSO4 were then addedto final concentrations of 1 mM and 10 μM respectively. The solution wasstirred slowly at RT for 10 minutes prior to being moved to the 4° C.cold room and shaken slowly overnight, open to the air.

[0307] The following day, the solution (still clear, with no apparentprecipitation) was centrifuged at 100,000×g for 1 hour. Supernatantsfrom multiple runs were pooled, and the bulk of the stabilized proteinwas dialyzed against 20 mM NaP, pH 7.4, 150 mM NaCl, 20% glycerol. Afterdialysis, the material was stored at −20° C.

[0308] Some (about 10 ml) of the protein solution (still in 1M Urea) wassaved back for biochemical analyses, and frozen at −20° C. for storage.

EXAMPLE 10 Expression of Hu-Asp2 and Derivatives in Insect Cells

[0309] Any materials (vectors, host cells, etc.) and methods that areuseful to express Hu-Asp2(a) should in principle be equally effectivefor expression of Hu-Asp2(b).

[0310] Expression by Baculovirus Infection.

[0311] The coding sequence of Hu-Asp2(a) and Hu-ASp2(b) and severalderivatives were engineered for expression in insect cells using thePCR. For the full-length sequence, a 5′-sense oligonucleotide primerthat modified the translation initiation site to fit the Kozak consensussequence was paired with a 3′-antisense primer that contains the naturaltranslation termination codon in the Hu-Asp2 sequence. PCR amplificationof the pcDNA3.1(hygro)/Hu-Asp2(a) template was used to prepare twoderivatives of Hu-Asp2(a) or Hu-Asp(b) that delete the C-terminaltransmembrane domain (SEQ ID NOS: 29-30 and 50-51, respectively) ordelete the transmembrane domain and introduce a hexa-histidine tag atthe C-terminus (SEQ ID NOS: 31-32 and 52-53) respectively, were alsoengineered using PCR. The same 5′-sense oligonucleotide primer describedabove was paired with either a 3′-antisense primer that (1) introduced atranslation termination codon after codon 453 (SEQ ID NO: 3) or (2)incorporated a hexa-histidine tag followed by a translation terminationcodon in the PCR using pcDNA3.1 (hygro)/Hu-Asp-2(a) as the template. Inall cases, the PCR reactions were performed amplified for 15 cyclesusing PwoI DNA polymerase (Boehringer-Mannheim) as outlined by thesupplier. The reaction products were digested to completion with BamHIand NotI and ligated to BamHI and NotI digested baculovirus transfervector pVL1393 (Invitrogen). A portion of the ligations was used totransform competent E. coli DH5_cells followed by antibiotic selectionon LB-Amp. Plasmid DNA was prepared by standard alkaline lysis andbanding in CsCl to yield the baculovirus transfer vectorspVL1393/Asp2(a), pVL1393/Asp2(a)ΔTM and pVL1393/Asp2(a)ΔTM(His)₆.Creation of recombinant baculoviruses and infection of sf9 insect cellswas performed using standard methods.

[0312] Expression by Transfection

[0313] Transient and stable expression of Hu-Asp2(a)ΔTM andHu-Asp2(a)ΔTM(His)₆ in High 5 insect cells was performed using theinsect expression vector pIZN5-His. The DNA inserts from the expressionplasmids vectors pVL 1393/Asp2(a), pVL 1393/Asp2(a)ΔTM and pVL1393/Asp2(a)ΔTM(His)₆ were excised by double digestion with BamHI andNotI and subcloned into BamHI and NotI digested pIZ/V5-His usingstandard methods. The resulting expression plasmids, referred to aspIZ/Hu-Asp2ΔTM and pIZ/Hu-Asp2ΔTM(His)₆; were prepared as describedabove.

[0314] For transfection, High 5 insect cells were cultured in High Fiveserum free medium supplemented with 10 μg/ml gentamycin at 27° C. insealed flasks. Transfections were performed using High five cells, Highfive serum free media supplemented with 10 μg/ml gentamycin, andInsectinPlus liposomes (Invitrogen, Carlsbad, Calif.) using standardmethods.

[0315] For large scale transient transfections, 1.2×10⁷ high five cellswere plated in a 150 mm tissue culture dish and allowed to attach atroom temperature for 15-30 minutes. During the attachment time theDNA/liposome mixture was prepared by mixing 6 ml of serum free media, 60μg Hu-Asp2(a)ΔTM/pIZ (+/−His) DNA and 120 μl of Insectin Plus andincubating at room temperature for 15 minutes. The plating media wasremoved from the dish of cells and replaced with the DNA/liposomemixture for 4 hours at room temperature with constant rocking at 2 rpm.An additional 6 ml of media was added to the dish prior to incubationfor 4 days at 27° C. in a humid incubator. Four days post transfectionthe media was harvested, clarified by centrifugation at 500×g, assayedfor Hu-Asp2(a) expression by Western blotting. For stable expression,the cells were treated with 50 μg/ml Zeocin and the surviving pool usedto prepared clonal cells by limiting dilution followed by analysis ofthe expression level as noted above.

[0316] Purification of Hu-Asp2(a)ΔTM and Hu-Asp2(a)ΔTM(His)₆

[0317] Removal of the transmembrane segment from Hu-Asp2(a) resulted inthe secretion of the polypeptide into the culture medium. Followingprotein production by either baculovirus infection or transfection, theconditioned medium was harvested, clarified by centrifugation, anddialyzed against Tris-HCl (pH 8.0). This material was then purified bysuccessive chromatography by anion exchange (Tris-HCl, pH 8.0) followedby cation exchange chromatography (Acetate buffer at pH 4.5) using NaClgradients. The elution profile was monitored by (1) Western blotanalysis and (2) by activity assay using the peptide substrate describedin Example 12. For the Hu-Asp2(a)ΔTM(His)₆, the conditioned medium wasdialyzed against Tris buffer (pH 8.0) and purified by sequentialchromatography on IMAC resin followed by anion exchange chromatography.

[0318] Amino-terminal sequence analysis of the purifiedHu-Asp2(a)ΔTM(His)₆ protein revealed that the signal peptide had beencleaved (TQHGIRLPLR, corresponding to SEQ ID NO: 32, residues 22-3).

EXAMPLE 11 Expression of Hu-Asp2(a) and Hu-Asp(b) in CHO Cells

[0319] The materials (vectors, host cells, etc.) and methods describedherein for expression of Hu-Asp2(a) are intended to be equallyapplicable for expression of Hu-Asp2(b).

[0320] Heterologous Expression of Hu-Asp-2(a) in CHO-K1 cells

[0321] The entire coding sequence of Hu-Asp2(a) was cloned into themammalian expression vector pcDNA3.1(+)Hygro (Invitrogen, Carlsbad,Calif.) which contains the CMV immediate early promoter and bGHpolyadenylation signal to drive over expression. The expression plasmid,pcDNA3.1 (+)Hygro/Hu-Asp2(a), was prepared by alkaline lysis and bandingin CsCl and completely sequenced on both strands to verify the integrityof the coding sequence.

[0322] Wild-type Chinese hamster ovary cells (CHO-K1) were obtained fromthe ATCC. The cells were maintained in monolayer cultures in α-MEMcontaining 10% FCS at 37° C. in 5% CO₂. Two 100 mm dishes of CHO-K1cells (60% confluent) were transfected with pcDNA3.1 (+)/Hygro alone(mock) or pcDNA3.1(+)Hygro/Hu-Asp2(a) or pcDNA3.1(+)Hygro/Hu-Asp2(b)using the cationic liposome DOTAP as recommended by the supplier (Roche,Indianapolis, Ind.). The cells were treated with the plasmidDNA/liposome mixtures for 15 hours and then the medium replaced withgrowth medium containing 500 Units/ml hygromycin B. In the case ofpcDNA3.1(+)Hygro/Hu-Asp2(a) or (b) transfected CHO-K1 cells, individualhygromycin B-resistant cells were cloned by limiting dilution. Followingclonal expansion of the individual cell lines, expression of Hu-Asp2(a)or Hu-Asp2(b) protein was assessed by Western blot analysis using apolyclonal rabbit antiserum raised against recombinant Hu-Asp2 preparedby expression in E. coli. Near confluent dishes of each cell line wereharvested by scraping into PBS and the cells recovered bycentrifugation. The cell pellets were resuspended in cold lysis buffer(25 mM Tris-HCl (pH 8.0)/5 mM EDTA) containing protease inhibitors andthe cells lysed by sonication. The soluble and membrane fractions wereseparated by centrifugation (105,000×g, 60 min) and normalized amountsof protein from each fraction were then separated by SDS-PAGE. Followingelectrotransfer of the separated polypeptides to PVDF membranes,Hu-Asp-2(a) or Hu-Asp2(b) protein was detected using rabbit anti-Hu-Asp2antiserum (1/1000 dilution) and the antibody-antigen complexes werevisualized using alkaline phosphatase conjugated goat anti-rabbitantibodies (1/2500). A specific immunoreactive protein with an apparentMr value of 65 kDa was detected in pcDNA3.1(+)Hygro/Hu-Asp2 transfectedcells and not mock-transfected cells. Also, the Hu-Asp2 polypeptide wasonly detected in the membrane fraction, consistent with the presence ofa signal peptide and single transmembrane domain in the predictedsequence. Based on this analysis, clone #5 had the highest expressionlevel of Hu-Asp2(a) protein and this production cell lines was scaled upto provide material for purification.

[0323] Purification of Recombinant Hu-Asp-2(a) from CHO-K1/Hu-Asp2 clone#5

[0324] In a typical purification, clone #5 cell pellets derived from 20150 mm dishes of confluent cells, were used as the starting material.The cell pellets were resuspended in 50 ml cold lysis buffer asdescribed above. The cells were lysed by polytron homogenization (2×20sec) and the lysate centrifuged at 338,000×g for 20 minutes. Themembrane pellet was then resuspended in 20 ml of cold lysis buffercontaining 50 mM β-octylglucoside followed by rocking at 4° C. for 1hour. The detergent extract was clarified by centrifugation at 338,000×gfor 20 minutes and the supernatant taken for further analysis.

[0325] The β-octylglucoside extract was applied to a Mono Q anionexchange column that was previously equilibrated with 25 mM Tris-HCl (pH8.0)/50 mM β-octylglucoside. Following sample application, the columnwas eluted with a linear gradient of increasing NaCl concentration(0-1.0 M over 30 minutes) and individual fractions assayed by Westernblot analysis and for β-secretase activity (see below). Fractionscontaining both Hu-Asp-2(a) immunoreactivity and β-secretase activitywere pooled and dialyzed against 25 mM NaOAc (pH 4.5)/50 mMβ-octylglucoside. Following dialysis, precipitated material was removedby centrifugation and the soluble material chromatographed on a MonoScation exchange column that was previously equilibrated in 25 mM NaOAc(pH 4.5)/50 mM β-octylglucoside. The column was eluted using a lineargradient of increasing NaCl concentration (0-1.0 M over 30 minutes) andindividual fractions assayed by Western blot analysis and forβ-secretase activity. Fractions containing both Hu-Asp2 immunoreactivityand β-secretase activity were combined and determined to be >95% pure bySDS-PAGE/Coomassie Blue staining.

[0326] The same methods were used to express and purify Hu-Asp2(b).

EXAMPLE 12 Assay of Hu-Asp2 β-secretase Activity using PeptideSubstrates

[0327] β-secretase Assay

[0328] Recombinant human Asp2(a) prepared in CHO cells and purified asdescribed in Example 11 was used to assay Asp2(a) proteolytic activitydirectly. Activity assays for Asp2(a) were performed using syntheticpeptide substrates containing either the wild-type APP β-secretase site(SEVKM↓DAEFR; SEQ ID NO: 64), the Swedish KM→NL mutation (SEVNL↓DAEFR;SEQ ID NO: 63), or the Aβ40 and 42 γ-secretase sites (RRGGVV↓IA↓TVIVGER;SEQ ID NO: 65). Reactions were performed in 50 mM2-[N—morpholino]ethane-sulfonate (“Na-MES,” pH 5.5) containing 1%β-octylglucoside, 70 mM peptide substrate, and recombinant Asp2(a) (1-5μg protein) for various times at 37° C. The reaction products werequantified by RP-HPLC using a linear gradient from 0-70 B over 30minutes (A=0.1% TFA in water, B=0.1% TFA/10% water/90% AcCN). Theelution profile was monitored by absorbance at 214 nm. In preliminaryexperiments, the two product peaks which eluted before the intactpeptide substrate, were confirmed to have the sequence DAEFR (SEQ ID NO:72) and SEVNL (SEQ ID NO: 73) using both Edman sequencing and MADLI-TOFmass spectrometry. Percent hydrolysis of the peptide substrate wascalculated by comparing the integrated peak areas for the two productpeptides and the starting material derived from the absorbance at 214nm. The sequence of cleavage/hydrolysis products was confirmed usingEdman sequencing and MADLI-TOF mass spectrometry.

[0329] The behavior of purified Asp2(a) in the proteolysis assays wasconsistent with the prior anti-sense studies which indicated thatAsp2(a) possesses β-secretase activity. Maximal proteolysis was seenwith the Swedigh β-secretase peptide, which, after 6 hours, was about10-fold higher than wild type APP.

[0330] The specificity of the protease cleavage reaction was determinedby performing the β-secretase assay in the presence of 8 μM pepstatin Aand the presence of a cocktail of protease inhibitors (10 μM leupeptin,10 μM E64, and 5 mM EDTA). Proteolytic activity was insensitive to boththe pepstatin and the cocktail, which are inhibitors of cathepsin D (andother aspartyl proteases), serine proteases, cysteinyl proteases, andmetalloproteases, respectively.

[0331] Hu-Asp2(b) when similarly expressed in CHO cells and purifiedusing identical conditions for extraction with β-o 10ctylglucoside andsequential chromatography over Mono Q and Mono S also cleaves theSwedish β-secretase peptide in proteolysis assays using identical assayconditions.

[0332] Collectively, this data establishes that both forms of Asp2(Hu-Asp2(a) and Hu-Asp2(b)) act directly in cell-free assays to cleavesynthetic APP peptides at the β-secretase site, and that the rate ofcleavage is greatly increased by the Swedish KM→NL mutation that isassociated with Alzheimer's disease.

[0333] An alternative β-secretase assay utilizes internally quenchedfluorescent substrates to monitor enzyme activity using fluorescencespectroscopy in a single sample or multiwell format. Each reactioncontained 50 mM Na-MES (pH 5.5), peptide substrate MCA-EVKMDAEF[K-DNP](SEQ ID NO: 71; BioSource International) (50 μM) and purified Hu-Asp-2enzyme. These components were equilibrated to 37° C. for various timesand the reaction initiated by addition of substrate. Excitation wasperformed at 330 nm and the reaction kinetics were monitored bymeasuring the fluorescence emission at 390 nm. To detect compounds thatmodulate Hu-Asp-2 activity, the test compounds were added during thepreincubation phase of the reaction and the kinetics of the reactionmonitored as described above. Activators are scored as compounds thatincrease the rate of appearance of fluorescence while inhibitorsdecrease the rate of appearance of fluorescence.

[0334] It will be clear that the invention may be practiced otherwisethan as particularly described in the foregoing description andexamples.

[0335] Numerous modifications and variations of the present inventionare possible in light of the above teachings and, therefore, are withinthe scope of the invention. The entire disclosure of all publicationscited herein are hereby incorporated by reference.

1 74 1 1804 DNA Homo sapiens 1 atgggcgcac tggcccgggc gctgctgctgcctctgctgg cccagtggct cctgcgcgcc 60 gccccggagc tggcccccgc gcccttcacgctgcccctcc gggtggccgc ggccacgaac 120 cgcgtagttg cgcccacccc gggacccgggacccctgccg agcgccacgc cgacggcttg 180 gcgctcgccc tggagcctgc cctggcgtcccccgcgggcg ccgccaactt cttggccatg 240 gtagacaacc tgcaggggga ctctggccgcggctactacc tggagatgct gatcgggacc 300 cccccgcaga agctacagat tctcgttgacactggaagca gtaactttgc cgtggcagga 360 accccgcact cctacataga cacgtactttgacacagaga ggtctagcac ataccgctcc 420 aagggctttg acgtcacagt gaagtacacacaaggaagct ggacgggctt cgttggggaa 480 gacctcgtca ccatccccaa aggcttcaatacttcttttc ttgtcaacat tgccactatt 540 tttgaatcag agaatttctt tttgcctgggattaaatgga atggaatact tggcctagct 600 tatgccacac ttgccaagcc atcaagttctctggagacct tcttcgactc cctggtgaca 660 caagcaaaca tccccaacgt tttctccatgcagatgtgtg gagccggctt gcccgttgct 720 ggatctggga ccaacggagg tagtcttgtcttgggtggaa ttgaaccaag tttgtataaa 780 ggagacatct ggtatacccc tattaaggaagagtggtact accagataga aattctgaaa 840 ttggaaattg gaggccaaag ccttaatctggactgcagag agtataacgc agacaaggcc 900 atcgtggaca gtggcaccac gctgctgcgcctgccccaga aggtgtttga tgcggtggtg 960 gaagctgtgg cccgcgcatc tctgattccagaattctctg atggtttctg gactgggtcc 1020 cagctggcgt gctggacgaa ttcggaaacaccttggtctt acttccctaa aatctccatc 1080 tacctgagag atgagaactc cagcaggtcattccgtatca caatcctgcc tcagctttac 1140 attcagccca tgatgggggc cggcctgaattatgaatgtt accgattcgg catttcccca 1200 tccacaaatg cgctggtgat cggtgccacggtgatggagg gcttctacgt catcttcgac 1260 agagcccaga agagggtggg cttcgcagcgagcccctgtg cagaaattgc aggtgctgca 1320 gtgtctgaaa tttccgggcc tttctcaacagaggatgtag ccagcaactg tgtccccgct 1380 cagtctttga gcgagcccat tttgtggattgtgtcctatg cgctcatgag cgtctgtgga 1440 gccatcctcc ttgtcttaat cgtcctgctgctgctgccgt tccggtgtca gcgtcgcccc 1500 cgtgaccctg aggtcgtcaa tgatgagtcctctctggtca gacatcgctg gaaatgaata 1560 gccaggcctg acctcaagca accatgaactcagctattaa gaaaatcaca tttccagggc 1620 agcagccggg atcgatggtg gcgctttctcctgtgcccac ccgtcttcaa tctctgttct 1680 gctcccagat gccttctaga ttcactgtcttttgattctt gattttcaag ctttcaaatc 1740 ctccctactt ccaagaaaaa taattaaaaaaaaaacttca ttctaaacca aaaaaaaaaa 1800 aaaa 1804 2 518 PRT Homo sapiens 2Met Gly Ala Leu Ala Arg Ala Leu Leu Leu Pro Leu Leu Ala Gln Trp 1 5 1015 Leu Leu Arg Ala Ala Pro Glu Leu Ala Pro Ala Pro Phe Thr Leu Pro 20 2530 Leu Arg Val Ala Ala Ala Thr Asn Arg Val Val Ala Pro Thr Pro Gly 35 4045 Pro Gly Thr Pro Ala Glu Arg His Ala Asp Gly Leu Ala Leu Ala Leu 50 5560 Glu Pro Ala Leu Ala Ser Pro Ala Gly Ala Ala Asn Phe Leu Ala Met 65 7075 80 Val Asp Asn Leu Gln Gly Asp Ser Gly Arg Gly Tyr Tyr Leu Glu Met 8590 95 Leu Ile Gly Thr Pro Pro Gln Lys Leu Gln Ile Leu Val Asp Thr Gly100 105 110 Ser Ser Asn Phe Ala Val Ala Gly Thr Pro His Ser Tyr Ile AspThr 115 120 125 Tyr Phe Asp Thr Glu Arg Ser Ser Thr Tyr Arg Ser Lys GlyPhe Asp 130 135 140 Val Thr Val Lys Tyr Thr Gln Gly Ser Trp Thr Gly PheVal Gly Glu 145 150 155 160 Asp Leu Val Thr Ile Pro Lys Gly Phe Asn ThrSer Phe Leu Val Asn 165 170 175 Ile Ala Thr Ile Phe Glu Ser Glu Asn PhePhe Leu Pro Gly Ile Lys 180 185 190 Trp Asn Gly Ile Leu Gly Leu Ala TyrAla Thr Leu Ala Lys Pro Ser 195 200 205 Ser Ser Leu Glu Thr Phe Phe AspSer Leu Val Thr Gln Ala Asn Ile 210 215 220 Pro Asn Val Phe Ser Met GlnMet Cys Gly Ala Gly Leu Pro Val Ala 225 230 235 240 Gly Ser Gly Thr AsnGly Gly Ser Leu Val Leu Gly Gly Ile Glu Pro 245 250 255 Ser Leu Tyr LysGly Asp Ile Trp Tyr Thr Pro Ile Lys Glu Glu Trp 260 265 270 Tyr Tyr GlnIle Glu Ile Leu Lys Leu Glu Ile Gly Gly Gln Ser Leu 275 280 285 Asn LeuAsp Cys Arg Glu Tyr Asn Ala Asp Lys Ala Ile Val Asp Ser 290 295 300 GlyThr Thr Leu Leu Arg Leu Pro Gln Lys Val Phe Asp Ala Val Val 305 310 315320 Glu Ala Val Ala Arg Ala Ser Leu Ile Pro Glu Phe Ser Asp Gly Phe 325330 335 Trp Thr Gly Ser Gln Leu Ala Cys Trp Thr Asn Ser Glu Thr Pro Trp340 345 350 Ser Tyr Phe Pro Lys Ile Ser Ile Tyr Leu Arg Asp Glu Asn SerSer 355 360 365 Arg Ser Phe Arg Ile Thr Ile Leu Pro Gln Leu Tyr Ile GlnPro Met 370 375 380 Met Gly Ala Gly Leu Asn Tyr Glu Cys Tyr Arg Phe GlyIle Ser Pro 385 390 395 400 Ser Thr Asn Ala Leu Val Ile Gly Ala Thr ValMet Glu Gly Phe Tyr 405 410 415 Val Ile Phe Asp Arg Ala Gln Lys Arg ValGly Phe Ala Ala Ser Pro 420 425 430 Cys Ala Glu Ile Ala Gly Ala Ala ValSer Glu Ile Ser Gly Pro Phe 435 440 445 Ser Thr Glu Asp Val Ala Ser AsnCys Val Pro Ala Gln Ser Leu Ser 450 455 460 Glu Pro Ile Leu Trp Ile ValSer Tyr Ala Leu Met Ser Val Cys Gly 465 470 475 480 Ala Ile Leu Leu ValLeu Ile Val Leu Leu Leu Leu Pro Phe Arg Cys 485 490 495 Gln Arg Arg ProArg Asp Pro Glu Val Val Asn Asp Glu Ser Ser Leu 500 505 510 Val Arg HisArg Trp Lys 515 3 2070 DNA Homo sapiens 3 atggcccaag ccctgccctggctcctgctg tggatgggcg cgggagtgct gcctgcccac 60 ggcacccagc acggcatccggctgcccctg cgcagcggcc tggggggcgc ccccctgggg 120 ctgcggctgc cccgggagaccgacgaagag cccgaggagc ccggccggag gggcagcttt 180 gtggagatgg tggacaacctgaggggcaag tcggggcagg gctactacgt ggagatgacc 240 gtgggcagcc ccccgcagacgctcaacatc ctggtggata caggcagcag taactttgca 300 gtgggtgctg ccccccaccccttcctgcat cgctactacc agaggcagct gtccagcaca 360 taccgggacc tccggaagggtgtgtatgtg ccctacaccc agggcaagtg ggaaggggag 420 ctgggcaccg acctggtaagcatcccccat ggccccaacg tcactgtgcg tgccaacatt 480 gctgccatca ctgaatcagacaagttcttc atcaacggct ccaactggga aggcatcctg 540 gggctggcct atgctgagattgccaggcct gacgactccc tggagccttt ctttgactct 600 ctggtaaagc agacccacgttcccaacctc ttctccctgc agctttgtgg tgctggcttc 660 cccctcaacc agtctgaagtgctggcctct gtcggaggga gcatgatcat tggaggtatc 720 gaccactcgc tgtacacaggcagtctctgg tatacaccca tccggcggga gtggtattat 780 gaggtcatca ttgtgcgggtggagatcaat ggacaggatc tgaaaatgga ctgcaaggag 840 tacaactatg acaagagcattgtggacagt ggcaccacca accttcgttt gcccaagaaa 900 gtgtttgaag ctgcagtcaaatccatcaag gcagcctcct ccacggagaa gttccctgat 960 ggtttctggc taggagagcagctggtgtgc tggcaagcag gcaccacccc ttggaacatt 1020 ttcccagtca tctcactctacctaatgggt gaggttacca accagtcctt ccgcatcacc 1080 atccttccgc agcaatacctgcggccagtg gaagatgtgg ccacgtccca agacgactgt 1140 tacaagtttg ccatctcacagtcatccacg ggcactgtta tgggagctgt tatcatggag 1200 ggcttctacg ttgtctttgatcgggcccga aaacgaattg gctttgctgt cagcgcttgc 1260 catgtgcacg atgagttcaggacggcagcg gtggaaggcc cttttgtcac cttggacatg 1320 gaagactgtg gctacaacattccacagaca gatgagtcaa ccctcatgac catagcctat 1380 gtcatggctg ccatctgcgccctcttcatg ctgccactct gcctcatggt gtgtcagtgg 1440 cgctgcctcc gctgcctgcgccagcagcat gatgactttg ctgatgacat ctccctgctg 1500 aagtgaggag gcccatgggcagaagataga gattcccctg gaccacacct ccgtggttca 1560 ctttggtcac aagtaggagacacagatggc acctgtggcc agagcacctc aggaccctcc 1620 ccacccacca aatgcctctgccttgatgga gaaggaaaag gctggcaagg tgggttccag 1680 ggactgtacc tgtaggaaacagaaaagaga agaaagaagc actctgctgg cgggaatact 1740 cttggtcacc tcaaatttaagtcgggaaat tctgctgctt gaaacttcag ccctgaacct 1800 ttgtccacca ttcctttaaattctccaacc caaagtattc ttcttttctt agtttcagaa 1860 gtactggcat cacacgcaggttaccttggc gtgtgtccct gtggtaccct ggcagagaag 1920 agaccaagct tgtttccctgctggccaaag tcagtaggag aggatgcaca gtttgctatt 1980 tgctttagag acagggactgtataaacaag cctaacattg gtgcaaagat tgcctcttga 2040 attaaaaaaa aaaaaaaaaaaaaaaaaaaa 2070 4 501 PRT Homo sapiens 4 Met Ala Gln Ala Leu Pro Trp LeuLeu Leu Trp Met Gly Ala Gly Val 1 5 10 15 Leu Pro Ala His Gly Thr GlnHis Gly Ile Arg Leu Pro Leu Arg Ser 20 25 30 Gly Leu Gly Gly Ala Pro LeuGly Leu Arg Leu Pro Arg Glu Thr Asp 35 40 45 Glu Glu Pro Glu Glu Pro GlyArg Arg Gly Ser Phe Val Glu Met Val 50 55 60 Asp Asn Leu Arg Gly Lys SerGly Gln Gly Tyr Tyr Val Glu Met Thr 65 70 75 80 Val Gly Ser Pro Pro GlnThr Leu Asn Ile Leu Val Asp Thr Gly Ser 85 90 95 Ser Asn Phe Ala Val GlyAla Ala Pro His Pro Phe Leu His Arg Tyr 100 105 110 Tyr Gln Arg Gln LeuSer Ser Thr Tyr Arg Asp Leu Arg Lys Gly Val 115 120 125 Tyr Val Pro TyrThr Gln Gly Lys Trp Glu Gly Glu Leu Gly Thr Asp 130 135 140 Leu Val SerIle Pro His Gly Pro Asn Val Thr Val Arg Ala Asn Ile 145 150 155 160 AlaAla Ile Thr Glu Ser Asp Lys Phe Phe Ile Asn Gly Ser Asn Trp 165 170 175Glu Gly Ile Leu Gly Leu Ala Tyr Ala Glu Ile Ala Arg Pro Asp Asp 180 185190 Ser Leu Glu Pro Phe Phe Asp Ser Leu Val Lys Gln Thr His Val Pro 195200 205 Asn Leu Phe Ser Leu Gln Leu Cys Gly Ala Gly Phe Pro Leu Asn Gln210 215 220 Ser Glu Val Leu Ala Ser Val Gly Gly Ser Met Ile Ile Gly GlyIle 225 230 235 240 Asp His Ser Leu Tyr Thr Gly Ser Leu Trp Tyr Thr ProIle Arg Arg 245 250 255 Glu Trp Tyr Tyr Glu Val Ile Ile Val Arg Val GluIle Asn Gly Gln 260 265 270 Asp Leu Lys Met Asp Cys Lys Glu Tyr Asn TyrAsp Lys Ser Ile Val 275 280 285 Asp Ser Gly Thr Thr Asn Leu Arg Leu ProLys Lys Val Phe Glu Ala 290 295 300 Ala Val Lys Ser Ile Lys Ala Ala SerSer Thr Glu Lys Phe Pro Asp 305 310 315 320 Gly Phe Trp Leu Gly Glu GlnLeu Val Cys Trp Gln Ala Gly Thr Thr 325 330 335 Pro Trp Asn Ile Phe ProVal Ile Ser Leu Tyr Leu Met Gly Glu Val 340 345 350 Thr Asn Gln Ser PheArg Ile Thr Ile Leu Pro Gln Gln Tyr Leu Arg 355 360 365 Pro Val Glu AspVal Ala Thr Ser Gln Asp Asp Cys Tyr Lys Phe Ala 370 375 380 Ile Ser GlnSer Ser Thr Gly Thr Val Met Gly Ala Val Ile Met Glu 385 390 395 400 GlyPhe Tyr Val Val Phe Asp Arg Ala Arg Lys Arg Ile Gly Phe Ala 405 410 415Val Ser Ala Cys His Val His Asp Glu Phe Arg Thr Ala Ala Val Glu 420 425430 Gly Pro Phe Val Thr Leu Asp Met Glu Asp Cys Gly Tyr Asn Ile Pro 435440 445 Gln Thr Asp Glu Ser Thr Leu Met Thr Ile Ala Tyr Val Met Ala Ala450 455 460 Ile Cys Ala Leu Phe Met Leu Pro Leu Cys Leu Met Val Cys GlnTrp 465 470 475 480 Arg Cys Leu Arg Cys Leu Arg Gln Gln His Asp Asp PheAla Asp Asp 485 490 495 Ile Ser Leu Leu Lys 500 5 1977 DNA Homo sapiens5 atggcccaag ccctgccctg gctcctgctg tggatgggcg cgggagtgct gcctgcccac 60ggcacccagc acggcatccg gctgcccctg cgcagcggcc tggggggcgc ccccctgggg 120ctgcggctgc cccgggagac cgacgaagag cccgaggagc ccggccggag gggcagcttt 180gtggagatgg tggacaacct gaggggcaag tcggggcagg gctactacgt ggagatgacc 240gtgggcagcc ccccgcagac gctcaacatc ctggtggata caggcagcag taactttgca 300gtgggtgctg ccccccaccc cttcctgcat cgctactacc agaggcagct gtccagcaca 360taccgggacc tccggaaggg tgtgtatgtg ccctacaccc agggcaagtg ggaaggggag 420ctgggcaccg acctggtaag catcccccat ggccccaacg tcactgtgcg tgccaacatt 480gctgccatca ctgaatcaga caagttcttc atcaacggct ccaactggga aggcatcctg 540gggctggcct atgctgagat tgccaggctt tgtggtgctg gcttccccct caaccagtct 600gaagtgctgg cctctgtcgg agggagcatg atcattggag gtatcgacca ctcgctgtac 660acaggcagtc tctggtatac acccatccgg cgggagtggt attatgaggt gatcattgtg 720cgggtggaga tcaatggaca ggatctgaaa atggactgca aggagtacaa ctatgacaag 780agcattgtgg acagtggcac caccaacctt cgtttgccca agaaagtgtt tgaagctgca 840gtcaaatcca tcaaggcagc ctcctccacg gagaagttcc ctgatggttt ctggctagga 900gagcagctgg tgtgctggca agcaggcacc accccttgga acattttccc agtcatctca 960ctctacctaa tgggtgaggt taccaaccag tccttccgca tcaccatcct tccgcagcaa 1020tacctgcggc cagtggaaga tgtggccacg tcccaagacg actgttacaa gtttgccatc 1080tcacagtcat ccacgggcac tgttatggga gctgttatca tggagggctt ctacgttgtc 1140tttgatcggg cccgaaaacg aattggcttt gctgtcagcg cttgccatgt gcacgatgag 1200ttcaggacgg cagcggtgga aggccctttt gtcaccttgg acatggaaga ctgtggctac 1260aacattccac agacagatga gtcaaccctc atgaccatag cctatgtcat ggctgccatc 1320tgcgccctct tcatgctgcc actctgcctc atggtgtgtc agtggcgctg cctccgctgc 1380ctgcgccagc agcatgatga ctttgctgat gacatctccc tgctgaagtg aggaggccca 1440tgggcagaag atagagattc ccctggacca cacctccgtg gttcactttg gtcacaagta 1500ggagacacag atggcacctg tggccagagc acctcaggac cctccccacc caccaaatgc 1560ctctgccttg atggagaagg aaaaggctgg caaggtgggt tccagggact gtacctgtag 1620gaaacagaaa agagaagaaa gaagcactct gctggcggga atactcttgg tcacctcaaa 1680tttaagtcgg gaaattctgc tgcttgaaac ttcagccctg aacctttgtc caccattcct 1740ttaaattctc caacccaaag tattcttctt ttcttagttt cagaagtact ggcatcacac 1800gcaggttacc ttggcgtgtg tccctgtggt accctggcag agaagagacc aagcttgttt 1860ccctgctggc caaagtcagt aggagaggat gcacagtttg ctatttgctt tagagacagg 1920gactgtataa acaagcctaa cattggtgca aagattgcct cttgaaaaaa aaaaaaa 1977 6476 PRT Homo sapiens 6 Met Ala Gln Ala Leu Pro Trp Leu Leu Leu Trp MetGly Ala Gly Val 1 5 10 15 Leu Pro Ala His Gly Thr Gln His Gly Ile ArgLeu Pro Leu Arg Ser 20 25 30 Gly Leu Gly Gly Ala Pro Leu Gly Leu Arg LeuPro Arg Glu Thr Asp 35 40 45 Glu Glu Pro Glu Glu Pro Gly Arg Arg Gly SerPhe Val Glu Met Val 50 55 60 Asp Asn Leu Arg Gly Lys Ser Gly Gln Gly TyrTyr Val Glu Met Thr 65 70 75 80 Val Gly Ser Pro Pro Gln Thr Leu Asn IleLeu Val Asp Thr Gly Ser 85 90 95 Ser Asn Phe Ala Val Gly Ala Ala Pro HisPro Phe Leu His Arg Tyr 100 105 110 Tyr Gln Arg Gln Leu Ser Ser Thr TyrArg Asp Leu Arg Lys Gly Val 115 120 125 Tyr Val Pro Tyr Thr Gln Gly LysTrp Glu Gly Glu Leu Gly Thr Asp 130 135 140 Leu Val Ser Ile Pro His GlyPro Asn Val Thr Val Arg Ala Asn Ile 145 150 155 160 Ala Ala Ile Thr GluSer Asp Lys Phe Phe Ile Asn Gly Ser Asn Trp 165 170 175 Glu Gly Ile LeuGly Leu Ala Tyr Ala Glu Ile Ala Arg Leu Cys Gly 180 185 190 Ala Gly PhePro Leu Asn Gln Ser Glu Val Leu Ala Ser Val Gly Gly 195 200 205 Ser MetIle Ile Gly Gly Ile Asp His Ser Leu Tyr Thr Gly Ser Leu 210 215 220 TrpTyr Thr Pro Ile Arg Arg Glu Trp Tyr Tyr Glu Val Ile Ile Val 225 230 235240 Arg Val Glu Ile Asn Gly Gln Asp Leu Lys Met Asp Cys Lys Glu Tyr 245250 255 Asn Tyr Asp Lys Ser Ile Val Asp Ser Gly Thr Thr Asn Leu Arg Leu260 265 270 Pro Lys Lys Val Phe Glu Ala Ala Val Lys Ser Ile Lys Ala AlaSer 275 280 285 Ser Thr Glu Lys Phe Pro Asp Gly Phe Trp Leu Gly Glu GlnLeu Val 290 295 300 Cys Trp Gln Ala Gly Thr Thr Pro Trp Asn Ile Phe ProVal Ile Ser 305 310 315 320 Leu Tyr Leu Met Gly Glu Val Thr Asn Gln SerPhe Arg Ile Thr Ile 325 330 335 Leu Pro Gln Gln Tyr Leu Arg Pro Val GluAsp Val Ala Thr Ser Gln 340 345 350 Asp Asp Cys Tyr Lys Phe Ala Ile SerGln Ser Ser Thr Gly Thr Val 355 360 365 Met Gly Ala Val Ile Met Glu GlyPhe Tyr Val Val Phe Asp Arg Ala 370 375 380 Arg Lys Arg Ile Gly Phe AlaVal Ser Ala Cys His Val His Asp Glu 385 390 395 400 Phe Arg Thr Ala AlaVal Glu Gly Pro Phe Val Thr Leu Asp Met Glu 405 410 415 Asp Cys Gly TyrAsn Ile Pro Gln Thr Asp Glu Ser Thr Leu Met Thr 420 425 430 Ile Ala TyrVal Met Ala Ala Ile Cys Ala Leu Phe Met Leu Pro Leu 435 440 445 Cys LeuMet Val Cys Gln Trp Arg Cys Leu Arg Cys Leu Arg Gln Gln 450 455 460 HisAsp Asp Phe Ala Asp Asp Ile Ser Leu Leu Lys 465 470 475 7 2043 DNA Musmusculus 7 atggccccag cgctgcactg gctcctgcta tgggtgggct cgggaatgctgcctgcccag 60 ggaacccatc tcggcatccg gctgcccctt cgcagcggcc tggcagggccacccctgggc 120 ctgaggctgc cccgggagac tgacgaggaa tcggaggagc ctggccggagaggcagcttt 180 gtggagatgg tggacaacct gaggggaaag tccggccagg gctactatgtggagatgacc 240 gtaggcagcc ccccacagac gctcaacatc ctggtggaca cgggcagtagtaactttgca 300 gtgggggctg ccccacaccc tttcctgcat cgctactacc agaggcagctgtccagcaca 360 tatcgagacc tccgaaaggg tgtgtatgtg ccctacaccc agggcaagtgggagggggaa 420 ctgggcaccg acctggtgag catccctcat ggccccaacg tcactgtgcgtgccaacatt 480 gctgccatca ctgaatcgga caagttcttc atcaatggtt ccaactgggagggcatccta 540 gggctggcct atgctgagat tgccaggccc gacgactctt tggagcccttctttgactcc 600 ctggtgaagc agacccacat tcccaacatc ttttccctgc agctctgtggcgctggcttc 660 cccctcaacc agaccgaggc actggcctcg gtgggaggga gcatgatcattggtggtatc 720 gaccactcgc tatacacggg cagtctctgg tacacaccca tccggcgggagtggtattat 780 gaagtgatca ttgtacgtgt ggaaatcaat ggtcaagatc tcaagatggactgcaaggag 840 tacaactacg acaagagcat tgtggacagt gggaccacca accttcgcttgcccaagaaa 900 gtatttgaag ctgccgtcaa gtccatcaag gcagcctcct cgacggagaagttcccggat 960 ggcttttggc taggggagca gctggtgtgc tggcaagcag gcacgaccccttggaacatt 1020 ttcccagtca tttcacttta cctcatgggt gaagtcacca atcagtccttccgcatcacc 1080 atccttcctc agcaatacct acggccggtg gaggacgtgg ccacgtcccaagacgactgt 1140 tacaagttcg ctgtctcaca gtcatccacg ggcactgtta tgggagccgtcatcatggaa 1200 ggtttctatg tcgtcttcga tcgagcccga aagcgaattg gctttgctgtcagcgcttgc 1260 catgtgcacg atgagttcag gacggcggca gtggaaggtc cgtttgttacggcagacatg 1320 gaagactgtg gctacaacat tccccagaca gatgagtcaa cacttatgaccatagcctat 1380 gtcatggcgg ccatctgcgc cctcttcatg ttgccactct gcctcatggtatgtcagtgg 1440 cgctgcctgc gttgcctgcg ccaccagcac gatgactttg ctgatgacatctccctgctc 1500 aagtaaggag gctcgtgggc agatgatgga gacgcccctg gaccacatctgggtggttcc 1560 ctttggtcac atgagttgga gctatggatg gtacctgtgg ccagagcacctcaggaccct 1620 caccaacctg ccaatgcttc tggcgtgaca gaacagagaa atcaggcaagctggattaca 1680 gggcttgcac ctgtaggaca caggagaggg aaggaagcag cgttctggtggcaggaatat 1740 ccttaggcac cacaaacttg agttggaaat tttgctgctt gaagcttcagccctgaccct 1800 ctgcccagca tcctttagag tctccaacct aaagtattct ttatgtccttccagaagtac 1860 tggcgtcata ctcaggctac ccggcatgtg tccctgtggt accctggcagagaaagggcc 1920 aatctcattc cctgctggcc aaagtcagca gaagaaggtg aagtttgccagttgctttag 1980 tgatagggac tgcagactca agcctacact ggtacaaaga ctgcgtcttgagataaacaa 2040 gaa 2043 8 501 PRT Mus musculus 8 Met Ala Pro Ala LeuHis Trp Leu Leu Leu Trp Val Gly Ser Gly Met 1 5 10 15 Leu Pro Ala GlnGly Thr His Leu Gly Ile Arg Leu Pro Leu Arg Ser 20 25 30 Gly Leu Ala GlyPro Pro Leu Gly Leu Arg Leu Pro Arg Glu Thr Asp 35 40 45 Glu Glu Ser GluGlu Pro Gly Arg Arg Gly Ser Phe Val Glu Met Val 50 55 60 Asp Asn Leu ArgGly Lys Ser Gly Gln Gly Tyr Tyr Val Glu Met Thr 65 70 75 80 Val Gly SerPro Pro Gln Thr Leu Asn Ile Leu Val Asp Thr Gly Ser 85 90 95 Ser Asn PheAla Val Gly Ala Ala Pro His Pro Phe Leu His Arg Tyr 100 105 110 Tyr GlnArg Gln Leu Ser Ser Thr Tyr Arg Asp Leu Arg Lys Gly Val 115 120 125 TyrVal Pro Tyr Thr Gln Gly Lys Trp Glu Gly Glu Leu Gly Thr Asp 130 135 140Leu Val Ser Ile Pro His Gly Pro Asn Val Thr Val Arg Ala Asn Ile 145 150155 160 Ala Ala Ile Thr Glu Ser Asp Lys Phe Phe Ile Asn Gly Ser Asn Trp165 170 175 Glu Gly Ile Leu Gly Leu Ala Tyr Ala Glu Ile Ala Arg Pro AspAsp 180 185 190 Ser Leu Glu Pro Phe Phe Asp Ser Leu Val Lys Gln Thr HisIle Pro 195 200 205 Asn Ile Phe Ser Leu Gln Leu Cys Gly Ala Gly Phe ProLeu Asn Gln 210 215 220 Thr Glu Ala Leu Ala Ser Val Gly Gly Ser Met IleIle Gly Gly Ile 225 230 235 240 Asp His Ser Leu Tyr Thr Gly Ser Leu TrpTyr Thr Pro Ile Arg Arg 245 250 255 Glu Trp Tyr Tyr Glu Val Ile Ile ValArg Val Glu Ile Asn Gly Gln 260 265 270 Asp Leu Lys Met Asp Cys Lys GluTyr Asn Tyr Asp Lys Ser Ile Val 275 280 285 Asp Ser Gly Thr Thr Asn LeuArg Leu Pro Lys Lys Val Phe Glu Ala 290 295 300 Ala Val Lys Ser Ile LysAla Ala Ser Ser Thr Glu Lys Phe Pro Asp 305 310 315 320 Gly Phe Trp LeuGly Glu Gln Leu Val Cys Trp Gln Ala Gly Thr Thr 325 330 335 Pro Trp AsnIle Phe Pro Val Ile Ser Leu Tyr Leu Met Gly Glu Val 340 345 350 Thr AsnGln Ser Phe Arg Ile Thr Ile Leu Pro Gln Gln Tyr Leu Arg 355 360 365 ProVal Glu Asp Val Ala Thr Ser Gln Asp Asp Cys Tyr Lys Phe Ala 370 375 380Val Ser Gln Ser Ser Thr Gly Thr Val Met Gly Ala Val Ile Met Glu 385 390395 400 Gly Phe Tyr Val Val Phe Asp Arg Ala Arg Lys Arg Ile Gly Phe Ala405 410 415 Val Ser Ala Cys His Val His Asp Glu Phe Arg Thr Ala Ala ValGlu 420 425 430 Gly Pro Phe Val Thr Ala Asp Met Glu Asp Cys Gly Tyr AsnIle Pro 435 440 445 Gln Thr Asp Glu Ser Thr Leu Met Thr Ile Ala Tyr ValMet Ala Ala 450 455 460 Ile Cys Ala Leu Phe Met Leu Pro Leu Cys Leu MetVal Cys Gln Trp 465 470 475 480 Arg Cys Leu Arg Cys Leu Arg His Gln HisAsp Asp Phe Ala Asp Asp 485 490 495 Ile Ser Leu Leu Lys 500 9 2088 DNAHomo sapiens 9 atgctgcccg gtttggcact gctcctgctg gccgcctgga cggctcgggcgctggaggta 60 cccactgatg gtaatgctgg cctgctggct gaaccccaga ttgccatgttctgtggcaga 120 ctgaacatgc acatgaatgt ccagaatggg aagtgggatt cagatccatcagggaccaaa 180 acctgcattg ataccaagga aggcatcctg cagtattgcc aagaagtctaccctgaactg 240 cagatcacca atgtggtaga agccaaccaa ccagtgacca tccagaactggtgcaagcgg 300 ggccgcaagc agtgcaagac ccatccccac tttgtgattc cctaccgctgcttagttggt 360 gagtttgtaa gtgatgccct tctcgttcct gacaagtgca aattcttacaccaggagagg 420 atggatgttt gcgaaactca tcttcactgg cacaccgtcg ccaaagagacatgcagtgag 480 aagagtacca acttgcatga ctacggcatg ttgctgccct gcggaattgacaagttccga 540 ggggtagagt ttgtgtgttg cccactggct gaagaaagtg acaatgtggattctgctgat 600 gcggaggagg atgactcgga tgtctggtgg ggcggagcag acacagactatgcagatggg 660 agtgaagaca aagtagtaga agtagcagag gaggaagaag tggctgaggtggaagaagaa 720 gaagccgatg atgacgagga cgatgaggat ggtgatgagg tagaggaagaggctgaggaa 780 ccctacgaag aagccacaga gagaaccacc agcattgcca ccaccaccaccaccaccaca 840 gagtctgtgg aagaggtggt tcgagttcct acaacagcag ccagtacccctgatgccgtt 900 gacaagtatc tcgagacacc tggggatgag aatgaacatg cccatttccagaaagccaaa 960 gagaggcttg aggccaagca ccgagagaga atgtcccagg tcatgagagaatgggaagag 1020 gcagaacgtc aagcaaagaa cttgcctaaa gctgataaga aggcagttatccagcatttc 1080 caggagaaag tggaatcttt ggaacaggaa gcagccaacg agagacagcagctggtggag 1140 acacacatgg ccagagtgga agccatgctc aatgaccgcc gccgcctggccctggagaac 1200 tacatcaccg ctctgcaggc tgttcctcct cggcctcgtc acgtgttcaatatgctaaag 1260 aagtatgtcc gcgcagaaca gaaggacaga cagcacaccc taaagcatttcgagcatgtg 1320 cgcatggtgg atcccaagaa agccgctcag atccggtccc aggttatgacacacctccgt 1380 gtgatttatg agcgcatgaa tcagtctctc tccctgctct acaacgtgcctgcagtggcc 1440 gaggagattc aggatgaagt tgatgagctg cttcagaaag agcaaaactattcagatgac 1500 gtcttggcca acatgattag tgaaccaagg atcagttacg gaaacgatgctctcatgcca 1560 tctttgaccg aaacgaaaac caccgtggag ctccttcccg tgaatggagagttcagcctg 1620 gacgatctcc agccgtggca ttcttttggg gctgactctg tgccagccaacacagaaaac 1680 gaagttgagc ctgttgatgc ccgccctgct gccgaccgag gactgaccactcgaccaggt 1740 tctgggttga caaatatcaa gacggaggag atctctgaag tgaagatggatgcagaattc 1800 cgacatgact caggatatga agttcatcat caaaaattgg tgttctttgcagaagatgtg 1860 ggttcaaaca aaggtgcaat cattggactc atggtgggcg gtgttgtcatagcgacagtg 1920 atcgtcatca ccttggtgat gctgaagaag aaacagtaca catccattcatcatggtgtg 1980 gtggaggttg acgccgctgt caccccagag gagcgccacc tgtccaagatgcagcagaac 2040 ggctacgaaa atccaaccta caagttcttt gagcagatgc agaactag2088 10 695 PRT Homo sapiens 10 Met Leu Pro Gly Leu Ala Leu Leu Leu LeuAla Ala Trp Thr Ala Arg 1 5 10 15 Ala Leu Glu Val Pro Thr Asp Gly AsnAla Gly Leu Leu Ala Glu Pro 20 25 30 Gln Ile Ala Met Phe Cys Gly Arg LeuAsn Met His Met Asn Val Gln 35 40 45 Asn Gly Lys Trp Asp Ser Asp Pro SerGly Thr Lys Thr Cys Ile Asp 50 55 60 Thr Lys Glu Gly Ile Leu Gln Tyr CysGln Glu Val Tyr Pro Glu Leu 65 70 75 80 Gln Ile Thr Asn Val Val Glu AlaAsn Gln Pro Val Thr Ile Gln Asn 85 90 95 Trp Cys Lys Arg Gly Arg Lys GlnCys Lys Thr His Pro His Phe Val 100 105 110 Ile Pro Tyr Arg Cys Leu ValGly Glu Phe Val Ser Asp Ala Leu Leu 115 120 125 Val Pro Asp Lys Cys LysPhe Leu His Gln Glu Arg Met Asp Val Cys 130 135 140 Glu Thr His Leu HisTrp His Thr Val Ala Lys Glu Thr Cys Ser Glu 145 150 155 160 Lys Ser ThrAsn Leu His Asp Tyr Gly Met Leu Leu Pro Cys Gly Ile 165 170 175 Asp LysPhe Arg Gly Val Glu Phe Val Cys Cys Pro Leu Ala Glu Glu 180 185 190 SerAsp Asn Val Asp Ser Ala Asp Ala Glu Glu Asp Asp Ser Asp Val 195 200 205Trp Trp Gly Gly Ala Asp Thr Asp Tyr Ala Asp Gly Ser Glu Asp Lys 210 215220 Val Val Glu Val Ala Glu Glu Glu Glu Val Ala Glu Val Glu Glu Glu 225230 235 240 Glu Ala Asp Asp Asp Glu Asp Asp Glu Asp Gly Asp Glu Val GluGlu 245 250 255 Glu Ala Glu Glu Pro Tyr Glu Glu Ala Thr Glu Arg Thr ThrSer Ile 260 265 270 Ala Thr Thr Thr Thr Thr Thr Thr Glu Ser Val Glu GluVal Val Arg 275 280 285 Val Pro Thr Thr Ala Ala Ser Thr Pro Asp Ala ValAsp Lys Tyr Leu 290 295 300 Glu Thr Pro Gly Asp Glu Asn Glu His Ala HisPhe Gln Lys Ala Lys 305 310 315 320 Glu Arg Leu Glu Ala Lys His Arg GluArg Met Ser Gln Val Met Arg 325 330 335 Glu Trp Glu Glu Ala Glu Arg GlnAla Lys Asn Leu Pro Lys Ala Asp 340 345 350 Lys Lys Ala Val Ile Gln HisPhe Gln Glu Lys Val Glu Ser Leu Glu 355 360 365 Gln Glu Ala Ala Asn GluArg Gln Gln Leu Val Glu Thr His Met Ala 370 375 380 Arg Val Glu Ala MetLeu Asn Asp Arg Arg Arg Leu Ala Leu Glu Asn 385 390 395 400 Tyr Ile ThrAla Leu Gln Ala Val Pro Pro Arg Pro Arg His Val Phe 405 410 415 Asn MetLeu Lys Lys Tyr Val Arg Ala Glu Gln Lys Asp Arg Gln His 420 425 430 ThrLeu Lys His Phe Glu His Val Arg Met Val Asp Pro Lys Lys Ala 435 440 445Ala Gln Ile Arg Ser Gln Val Met Thr His Leu Arg Val Ile Tyr Glu 450 455460 Arg Met Asn Gln Ser Leu Ser Leu Leu Tyr Asn Val Pro Ala Val Ala 465470 475 480 Glu Glu Ile Gln Asp Glu Val Asp Glu Leu Leu Gln Lys Glu GlnAsn 485 490 495 Tyr Ser Asp Asp Val Leu Ala Asn Met Ile Ser Glu Pro ArgIle Ser 500 505 510 Tyr Gly Asn Asp Ala Leu Met Pro Ser Leu Thr Glu ThrLys Thr Thr 515 520 525 Val Glu Leu Leu Pro Val Asn Gly Glu Phe Ser LeuAsp Asp Leu Gln 530 535 540 Pro Trp His Ser Phe Gly Ala Asp Ser Val ProAla Asn Thr Glu Asn 545 550 555 560 Glu Val Glu Pro Val Asp Ala Arg ProAla Ala Asp Arg Gly Leu Thr 565 570 575 Thr Arg Pro Gly Ser Gly Leu ThrAsn Ile Lys Thr Glu Glu Ile Ser 580 585 590 Glu Val Lys Met Asp Ala GluPhe Arg His Asp Ser Gly Tyr Glu Val 595 600 605 His His Gln Lys Leu ValPhe Phe Ala Glu Asp Val Gly Ser Asn Lys 610 615 620 Gly Ala Ile Ile GlyLeu Met Val Gly Gly Val Val Ile Ala Thr Val 625 630 635 640 Ile Val IleThr Leu Val Met Leu Lys Lys Lys Gln Tyr Thr Ser Ile 645 650 655 His HisGly Val Val Glu Val Asp Ala Ala Val Thr Pro Glu Glu Arg 660 665 670 HisLeu Ser Lys Met Gln Gln Asn Gly Tyr Glu Asn Pro Thr Tyr Lys 675 680 685Phe Phe Glu Gln Met Gln Asn 690 695 11 2088 DNA Homo sapiens 11atgctgcccg gtttggcact gctcctgctg gccgcctgga cggctcgggc gctggaggta 60cccactgatg gtaatgctgg cctgctggct gaaccccaga ttgccatgtt ctgtggcaga 120ctgaacatgc acatgaatgt ccagaatggg aagtgggatt cagatccatc agggaccaaa 180acctgcattg ataccaagga aggcatcctg cagtattgcc aagaagtcta ccctgaactg 240cagatcacca atgtggtaga agccaaccaa ccagtgacca tccagaactg gtgcaagcgg 300ggccgcaagc agtgcaagac ccatccccac tttgtgattc cctaccgctg cttagttggt 360gagtttgtaa gtgatgccct tctcgttcct gacaagtgca aattcttaca ccaggagagg 420atggatgttt gcgaaactca tcttcactgg cacaccgtcg ccaaagagac atgcagtgag 480aagagtacca acttgcatga ctacggcatg ttgctgccct gcggaattga caagttccga 540ggggtagagt ttgtgtgttg cccactggct gaagaaagtg acaatgtgga ttctgctgat 600gcggaggagg atgactcgga tgtctggtgg ggcggagcag acacagacta tgcagatggg 660agtgaagaca aagtagtaga agtagcagag gaggaagaag tggctgaggt ggaagaagaa 720gaagccgatg atgacgagga cgatgaggat ggtgatgagg tagaggaaga ggctgaggaa 780ccctacgaag aagccacaga gagaaccacc agcattgcca ccaccaccac caccaccaca 840gagtctgtgg aagaggtggt tcgagttcct acaacagcag ccagtacccc tgatgccgtt 900gacaagtatc tcgagacacc tggggatgag aatgaacatg cccatttcca gaaagccaaa 960gagaggcttg aggccaagca ccgagagaga atgtcccagg tcatgagaga atgggaagag 1020gcagaacgtc aagcaaagaa cttgcctaaa gctgataaga aggcagttat ccagcatttc 1080caggagaaag tggaatcttt ggaacaggaa gcagccaacg agagacagca gctggtggag 1140acacacatgg ccagagtgga agccatgctc aatgaccgcc gccgcctggc cctggagaac 1200tacatcaccg ctctgcaggc tgttcctcct cggcctcgtc acgtgttcaa tatgctaaag 1260aagtatgtcc gcgcagaaca gaaggacaga cagcacaccc taaagcattt cgagcatgtg 1320cgcatggtgg atcccaagaa agccgctcag atccggtccc aggttatgac acacctccgt 1380gtgatttatg agcgcatgaa tcagtctctc tccctgctct acaacgtgcc tgcagtggcc 1440gaggagattc aggatgaagt tgatgagctg cttcagaaag agcaaaacta ttcagatgac 1500gtcttggcca acatgattag tgaaccaagg atcagttacg gaaacgatgc tctcatgcca 1560tctttgaccg aaacgaaaac caccgtggag ctccttcccg tgaatggaga gttcagcctg 1620gacgatctcc agccgtggca ttcttttggg gctgactctg tgccagccaa cacagaaaac 1680gaagttgagc ctgttgatgc ccgccctgct gccgaccgag gactgaccac tcgaccaggt 1740tctgggttga caaatatcaa gacggaggag atctctgaag tgaatctgga tgcagaattc 1800cgacatgact caggatatga agttcatcat caaaaattgg tgttctttgc agaagatgtg 1860ggttcaaaca aaggtgcaat cattggactc atggtgggcg gtgttgtcat agcgacagtg 1920atcgtcatca ccttggtgat gctgaagaag aaacagtaca catccattca tcatggtgtg 1980gtggaggttg acgccgctgt caccccagag gagcgccacc tgtccaagat gcagcagaac 2040ggctacgaaa atccaaccta caagttcttt gagcagatgc agaactag 2088 12 695 PRTHomo sapiens 12 Met Leu Pro Gly Leu Ala Leu Leu Leu Leu Ala Ala Trp ThrAla Arg 1 5 10 15 Ala Leu Glu Val Pro Thr Asp Gly Asn Ala Gly Leu LeuAla Glu Pro 20 25 30 Gln Ile Ala Met Phe Cys Gly Arg Leu Asn Met His MetAsn Val Gln 35 40 45 Asn Gly Lys Trp Asp Ser Asp Pro Ser Gly Thr Lys ThrCys Ile Asp 50 55 60 Thr Lys Glu Gly Ile Leu Gln Tyr Cys Gln Glu Val TyrPro Glu Leu 65 70 75 80 Gln Ile Thr Asn Val Val Glu Ala Asn Gln Pro ValThr Ile Gln Asn 85 90 95 Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys Thr HisPro His Phe Val 100 105 110 Ile Pro Tyr Arg Cys Leu Val Gly Glu Phe ValSer Asp Ala Leu Leu 115 120 125 Val Pro Asp Lys Cys Lys Phe Leu His GlnGlu Arg Met Asp Val Cys 130 135 140 Glu Thr His Leu His Trp His Thr ValAla Lys Glu Thr Cys Ser Glu 145 150 155 160 Lys Ser Thr Asn Leu His AspTyr Gly Met Leu Leu Pro Cys Gly Ile 165 170 175 Asp Lys Phe Arg Gly ValGlu Phe Val Cys Cys Pro Leu Ala Glu Glu 180 185 190 Ser Asp Asn Val AspSer Ala Asp Ala Glu Glu Asp Asp Ser Asp Val 195 200 205 Trp Trp Gly GlyAla Asp Thr Asp Tyr Ala Asp Gly Ser Glu Asp Lys 210 215 220 Val Val GluVal Ala Glu Glu Glu Glu Val Ala Glu Val Glu Glu Glu 225 230 235 240 GluAla Asp Asp Asp Glu Asp Asp Glu Asp Gly Asp Glu Val Glu Glu 245 250 255Glu Ala Glu Glu Pro Tyr Glu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260 265270 Ala Thr Thr Thr Thr Thr Thr Thr Glu Ser Val Glu Glu Val Val Arg 275280 285 Val Pro Thr Thr Ala Ala Ser Thr Pro Asp Ala Val Asp Lys Tyr Leu290 295 300 Glu Thr Pro Gly Asp Glu Asn Glu His Ala His Phe Gln Lys AlaLys 305 310 315 320 Glu Arg Leu Glu Ala Lys His Arg Glu Arg Met Ser GlnVal Met Arg 325 330 335 Glu Trp Glu Glu Ala Glu Arg Gln Ala Lys Asn LeuPro Lys Ala Asp 340 345 350 Lys Lys Ala Val Ile Gln His Phe Gln Glu LysVal Glu Ser Leu Glu 355 360 365 Gln Glu Ala Ala Asn Glu Arg Gln Gln LeuVal Glu Thr His Met Ala 370 375 380 Arg Val Glu Ala Met Leu Asn Asp ArgArg Arg Leu Ala Leu Glu Asn 385 390 395 400 Tyr Ile Thr Ala Leu Gln AlaVal Pro Pro Arg Pro Arg His Val Phe 405 410 415 Asn Met Leu Lys Lys TyrVal Arg Ala Glu Gln Lys Asp Arg Gln His 420 425 430 Thr Leu Lys His PheGlu His Val Arg Met Val Asp Pro Lys Lys Ala 435 440 445 Ala Gln Ile ArgSer Gln Val Met Thr His Leu Arg Val Ile Tyr Glu 450 455 460 Arg Met AsnGln Ser Leu Ser Leu Leu Tyr Asn Val Pro Ala Val Ala 465 470 475 480 GluGlu Ile Gln Asp Glu Val Asp Glu Leu Leu Gln Lys Glu Gln Asn 485 490 495Tyr Ser Asp Asp Val Leu Ala Asn Met Ile Ser Glu Pro Arg Ile Ser 500 505510 Tyr Gly Asn Asp Ala Leu Met Pro Ser Leu Thr Glu Thr Lys Thr Thr 515520 525 Val Glu Leu Leu Pro Val Asn Gly Glu Phe Ser Leu Asp Asp Leu Gln530 535 540 Pro Trp His Ser Phe Gly Ala Asp Ser Val Pro Ala Asn Thr GluAsn 545 550 555 560 Glu Val Glu Pro Val Asp Ala Arg Pro Ala Ala Asp ArgGly Leu Thr 565 570 575 Thr Arg Pro Gly Ser Gly Leu Thr Asn Ile Lys ThrGlu Glu Ile Ser 580 585 590 Glu Val Asn Leu Asp Ala Glu Phe Arg His AspSer Gly Tyr Glu Val 595 600 605 His His Gln Lys Leu Val Phe Phe Ala GluAsp Val Gly Ser Asn Lys 610 615 620 Gly Ala Ile Ile Gly Leu Met Val GlyGly Val Val Ile Ala Thr Val 625 630 635 640 Ile Val Ile Thr Leu Val MetLeu Lys Lys Lys Gln Tyr Thr Ser Ile 645 650 655 His His Gly Val Val GluVal Asp Ala Ala Val Thr Pro Glu Glu Arg 660 665 670 His Leu Ser Lys MetGln Gln Asn Gly Tyr Glu Asn Pro Thr Tyr Lys 675 680 685 Phe Phe Glu GlnMet Gln Asn 690 695 13 2088 DNA Homo sapiens 13 atgctgcccg gtttggcactgctcctgctg gccgcctgga cggctcgggc gctggaggta 60 cccactgatg gtaatgctggcctgctggct gaaccccaga ttgccatgtt ctgtggcaga 120 ctgaacatgc acatgaatgtccagaatggg aagtgggatt cagatccatc agggaccaaa 180 acctgcattg ataccaaggaaggcatcctg cagtattgcc aagaagtcta ccctgaactg 240 cagatcacca atgtggtagaagccaaccaa ccagtgacca tccagaactg gtgcaagcgg 300 ggccgcaagc agtgcaagacccatccccac tttgtgattc cctaccgctg cttagttggt 360 gagtttgtaa gtgatgcccttctcgttcct gacaagtgca aattcttaca ccaggagagg 420 atggatgttt gcgaaactcatcttcactgg cacaccgtcg ccaaagagac atgcagtgag 480 aagagtacca acttgcatgactacggcatg ttgctgccct gcggaattga caagttccga 540 ggggtagagt ttgtgtgttgcccactggct gaagaaagtg acaatgtgga ttctgctgat 600 gcggaggagg atgactcggatgtctggtgg ggcggagcag acacagacta tgcagatggg 660 agtgaagaca aagtagtagaagtagcagag gaggaagaag tggctgaggt ggaagaagaa 720 gaagccgatg atgacgaggacgatgaggat ggtgatgagg tagaggaaga ggctgaggaa 780 ccctacgaag aagccacagagagaaccacc agcattgcca ccaccaccac caccaccaca 840 gagtctgtgg aagaggtggttcgagttcct acaacagcag ccagtacccc tgatgccgtt 900 gacaagtatc tcgagacacctggggatgag aatgaacatg cccatttcca gaaagccaaa 960 gagaggcttg aggccaagcaccgagagaga atgtcccagg tcatgagaga atgggaagag 1020 gcagaacgtc aagcaaagaacttgcctaaa gctgataaga aggcagttat ccagcatttc 1080 caggagaaag tggaatctttggaacaggaa gcagccaacg agagacagca gctggtggag 1140 acacacatgg ccagagtggaagccatgctc aatgaccgcc gccgcctggc cctggagaac 1200 tacatcaccg ctctgcaggctgttcctcct cggcctcgtc acgtgttcaa tatgctaaag 1260 aagtatgtcc gcgcagaacagaaggacaga cagcacaccc taaagcattt cgagcatgtg 1320 cgcatggtgg atcccaagaaagccgctcag atccggtccc aggttatgac acacctccgt 1380 gtgatttatg agcgcatgaatcagtctctc tccctgctct acaacgtgcc tgcagtggcc 1440 gaggagattc aggatgaagttgatgagctg cttcagaaag agcaaaacta ttcagatgac 1500 gtcttggcca acatgattagtgaaccaagg atcagttacg gaaacgatgc tctcatgcca 1560 tctttgaccg aaacgaaaaccaccgtggag ctccttcccg tgaatggaga gttcagcctg 1620 gacgatctcc agccgtggcattcttttggg gctgactctg tgccagccaa cacagaaaac 1680 gaagttgagc ctgttgatgcccgccctgct gccgaccgag gactgaccac tcgaccaggt 1740 tctgggttga caaatatcaagacggaggag atctctgaag tgaagatgga tgcagaattc 1800 cgacatgact caggatatgaagttcatcat caaaaattgg tgttctttgc agaagatgtg 1860 ggttcaaaca aaggtgcaatcattggactc atggtgggcg gtgttgtcat agcgacagtg 1920 atcttcatca ccttggtgatgctgaagaag aaacagtaca catccattca tcatggtgtg 1980 gtggaggttg acgccgctgtcaccccagag gagcgccacc tgtccaagat gcagcagaac 2040 ggctacgaaa atccaacctacaagttcttt gagcagatgc agaactag 2088 14 695 PRT Homo sapiens 14 Met LeuPro Gly Leu Ala Leu Leu Leu Leu Ala Ala Trp Thr Ala Arg 1 5 10 15 AlaLeu Glu Val Pro Thr Asp Gly Asn Ala Gly Leu Leu Ala Glu Pro 20 25 30 GlnIle Ala Met Phe Cys Gly Arg Leu Asn Met His Met Asn Val Gln 35 40 45 AsnGly Lys Trp Asp Ser Asp Pro Ser Gly Thr Lys Thr Cys Ile Asp 50 55 60 ThrLys Glu Gly Ile Leu Gln Tyr Cys Gln Glu Val Tyr Pro Glu Leu 65 70 75 80Gln Ile Thr Asn Val Val Glu Ala Asn Gln Pro Val Thr Ile Gln Asn 85 90 95Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys Thr His Pro His Phe Val 100 105110 Ile Pro Tyr Arg Cys Leu Val Gly Glu Phe Val Ser Asp Ala Leu Leu 115120 125 Val Pro Asp Lys Cys Lys Phe Leu His Gln Glu Arg Met Asp Val Cys130 135 140 Glu Thr His Leu His Trp His Thr Val Ala Lys Glu Thr Cys SerGlu 145 150 155 160 Lys Ser Thr Asn Leu His Asp Tyr Gly Met Leu Leu ProCys Gly Ile 165 170 175 Asp Lys Phe Arg Gly Val Glu Phe Val Cys Cys ProLeu Ala Glu Glu 180 185 190 Ser Asp Asn Val Asp Ser Ala Asp Ala Glu GluAsp Asp Ser Asp Val 195 200 205 Trp Trp Gly Gly Ala Asp Thr Asp Tyr AlaAsp Gly Ser Glu Asp Lys 210 215 220 Val Val Glu Val Ala Glu Glu Glu GluVal Ala Glu Val Glu Glu Glu 225 230 235 240 Glu Ala Asp Asp Asp Glu AspAsp Glu Asp Gly Asp Glu Val Glu Glu 245 250 255 Glu Ala Glu Glu Pro TyrGlu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260 265 270 Ala Thr Thr Thr ThrThr Thr Thr Glu Ser Val Glu Glu Val Val Arg 275 280 285 Val Pro Thr ThrAla Ala Ser Thr Pro Asp Ala Val Asp Lys Tyr Leu 290 295 300 Glu Thr ProGly Asp Glu Asn Glu His Ala His Phe Gln Lys Ala Lys 305 310 315 320 GluArg Leu Glu Ala Lys His Arg Glu Arg Met Ser Gln Val Met Arg 325 330 335Glu Trp Glu Glu Ala Glu Arg Gln Ala Lys Asn Leu Pro Lys Ala Asp 340 345350 Lys Lys Ala Val Ile Gln His Phe Gln Glu Lys Val Glu Ser Leu Glu 355360 365 Gln Glu Ala Ala Asn Glu Arg Gln Gln Leu Val Glu Thr His Met Ala370 375 380 Arg Val Glu Ala Met Leu Asn Asp Arg Arg Arg Leu Ala Leu GluAsn 385 390 395 400 Tyr Ile Thr Ala Leu Gln Ala Val Pro Pro Arg Pro ArgHis Val Phe 405 410 415 Asn Met Leu Lys Lys Tyr Val Arg Ala Glu Gln LysAsp Arg Gln His 420 425 430 Thr Leu Lys His Phe Glu His Val Arg Met ValAsp Pro Lys Lys Ala 435 440 445 Ala Gln Ile Arg Ser Gln Val Met Thr HisLeu Arg Val Ile Tyr Glu 450 455 460 Arg Met Asn Gln Ser Leu Ser Leu LeuTyr Asn Val Pro Ala Val Ala 465 470 475 480 Glu Glu Ile Gln Asp Glu ValAsp Glu Leu Leu Gln Lys Glu Gln Asn 485 490 495 Tyr Ser Asp Asp Val LeuAla Asn Met Ile Ser Glu Pro Arg Ile Ser 500 505 510 Tyr Gly Asn Asp AlaLeu Met Pro Ser Leu Thr Glu Thr Lys Thr Thr 515 520 525 Val Glu Leu LeuPro Val Asn Gly Glu Phe Ser Leu Asp Asp Leu Gln 530 535 540 Pro Trp HisSer Phe Gly Ala Asp Ser Val Pro Ala Asn Thr Glu Asn 545 550 555 560 GluVal Glu Pro Val Asp Ala Arg Pro Ala Ala Asp Arg Gly Leu Thr 565 570 575Thr Arg Pro Gly Ser Gly Leu Thr Asn Ile Lys Thr Glu Glu Ile Ser 580 585590 Glu Val Lys Met Asp Ala Glu Phe Arg His Asp Ser Gly Tyr Glu Val 595600 605 His His Gln Lys Leu Val Phe Phe Ala Glu Asp Val Gly Ser Asn Lys610 615 620 Gly Ala Ile Ile Gly Leu Met Val Gly Gly Val Val Ile Ala ThrVal 625 630 635 640 Ile Phe Ile Thr Leu Val Met Leu Lys Lys Lys Gln TyrThr Ser Ile 645 650 655 His His Gly Val Val Glu Val Asp Ala Ala Val ThrPro Glu Glu Arg 660 665 670 His Leu Ser Lys Met Gln Gln Asn Gly Tyr GluAsn Pro Thr Tyr Lys 675 680 685 Phe Phe Glu Gln Met Gln Asn 690 695 152094 DNA Homo sapiens 15 atgctgcccg gtttggcact gctcctgctg gccgcctggacggctcgggc gctggaggta 60 cccactgatg gtaatgctgg cctgctggct gaaccccagattgccatgtt ctgtggcaga 120 ctgaacatgc acatgaatgt ccagaatggg aagtgggattcagatccatc agggaccaaa 180 acctgcattg ataccaagga aggcatcctg cagtattgccaagaagtcta ccctgaactg 240 cagatcacca atgtggtaga agccaaccaa ccagtgaccatccagaactg gtgcaagcgg 300 ggccgcaagc agtgcaagac ccatccccac tttgtgattccctaccgctg cttagttggt 360 gagtttgtaa gtgatgccct tctcgttcct gacaagtgcaaattcttaca ccaggagagg 420 atggatgttt gcgaaactca tcttcactgg cacaccgtcgccaaagagac atgcagtgag 480 aagagtacca acttgcatga ctacggcatg ttgctgccctgcggaattga caagttccga 540 ggggtagagt ttgtgtgttg cccactggct gaagaaagtgacaatgtgga ttctgctgat 600 gcggaggagg atgactcgga tgtctggtgg ggcggagcagacacagacta tgcagatggg 660 agtgaagaca aagtagtaga agtagcagag gaggaagaagtggctgaggt ggaagaagaa 720 gaagccgatg atgacgagga cgatgaggat ggtgatgaggtagaggaaga ggctgaggaa 780 ccctacgaag aagccacaga gagaaccacc agcattgccaccaccaccac caccaccaca 840 gagtctgtgg aagaggtggt tcgagttcct acaacagcagccagtacccc tgatgccgtt 900 gacaagtatc tcgagacacc tggggatgag aatgaacatgcccatttcca gaaagccaaa 960 gagaggcttg aggccaagca ccgagagaga atgtcccaggtcatgagaga atgggaagag 1020 gcagaacgtc aagcaaagaa cttgcctaaa gctgataagaaggcagttat ccagcatttc 1080 caggagaaag tggaatcttt ggaacaggaa gcagccaacgagagacagca gctggtggag 1140 acacacatgg ccagagtgga agccatgctc aatgaccgccgccgcctggc cctggagaac 1200 tacatcaccg ctctgcaggc tgttcctcct cggcctcgtcacgtgttcaa tatgctaaag 1260 aagtatgtcc gcgcagaaca gaaggacaga cagcacaccctaaagcattt cgagcatgtg 1320 cgcatggtgg atcccaagaa agccgctcag atccggtcccaggttatgac acacctccgt 1380 gtgatttatg agcgcatgaa tcagtctctc tccctgctctacaacgtgcc tgcagtggcc 1440 gaggagattc aggatgaagt tgatgagctg cttcagaaagagcaaaacta ttcagatgac 1500 gtcttggcca acatgattag tgaaccaagg atcagttacggaaacgatgc tctcatgcca 1560 tctttgaccg aaacgaaaac caccgtggag ctccttcccgtgaatggaga gttcagcctg 1620 gacgatctcc agccgtggca ttcttttggg gctgactctgtgccagccaa cacagaaaac 1680 gaagttgagc ctgttgatgc ccgccctgct gccgaccgaggactgaccac tcgaccaggt 1740 tctgggttga caaatatcaa gacggaggag atctctgaagtgaagatgga tgcagaattc 1800 cgacatgact caggatatga agttcatcat caaaaattggtgttctttgc agaagatgtg 1860 ggttcaaaca aaggtgcaat cattggactc atggtgggcggtgttgtcat agcgacagtg 1920 atcgtcatca ccttggtgat gctgaagaag aaacagtacacatccattca tcatggtgtg 1980 gtggaggttg acgccgctgt caccccagag gagcgccacctgtccaagat gcagcagaac 2040 ggctacgaaa atccaaccta caagttcttt gagcagatgcagaacaagaa gtag 2094 16 697 PRT Homo sapines 16 Met Leu Pro Gly Leu AlaLeu Leu Leu Leu Ala Ala Trp Thr Ala Arg 1 5 10 15 Ala Leu Glu Val ProThr Asp Gly Asn Ala Gly Leu Leu Ala Glu Pro 20 25 30 Gln Ile Ala Met PheCys Gly Arg Leu Asn Met His Met Asn Val Gln 35 40 45 Asn Gly Lys Trp AspSer Asp Pro Ser Gly Thr Lys Thr Cys Ile Asp 50 55 60 Thr Lys Glu Gly IleLeu Gln Tyr Cys Gln Glu Val Tyr Pro Glu Leu 65 70 75 80 Gln Ile Thr AsnVal Val Glu Ala Asn Gln Pro Val Thr Ile Gln Asn 85 90 95 Trp Cys Lys ArgGly Arg Lys Gln Cys Lys Thr His Pro His Phe Val 100 105 110 Ile Pro TyrArg Cys Leu Val Gly Glu Phe Val Ser Asp Ala Leu Leu 115 120 125 Val ProAsp Lys Cys Lys Phe Leu His Gln Glu Arg Met Asp Val Cys 130 135 140 GluThr His Leu His Trp His Thr Val Ala Lys Glu Thr Cys Ser Glu 145 150 155160 Lys Ser Thr Asn Leu His Asp Tyr Gly Met Leu Leu Pro Cys Gly Ile 165170 175 Asp Lys Phe Arg Gly Val Glu Phe Val Cys Cys Pro Leu Ala Glu Glu180 185 190 Ser Asp Asn Val Asp Ser Ala Asp Ala Glu Glu Asp Asp Ser AspVal 195 200 205 Trp Trp Gly Gly Ala Asp Thr Asp Tyr Ala Asp Gly Ser GluAsp Lys 210 215 220 Val Val Glu Val Ala Glu Glu Glu Glu Val Ala Glu ValGlu Glu Glu 225 230 235 240 Glu Ala Asp Asp Asp Glu Asp Asp Glu Asp GlyAsp Glu Val Glu Glu 245 250 255 Glu Ala Glu Glu Pro Tyr Glu Glu Ala ThrGlu Arg Thr Thr Ser Ile 260 265 270 Ala Thr Thr Thr Thr Thr Thr Thr GluSer Val Glu Glu Val Val Arg 275 280 285 Val Pro Thr Thr Ala Ala Ser ThrPro Asp Ala Val Asp Lys Tyr Leu 290 295 300 Glu Thr Pro Gly Asp Glu AsnGlu His Ala His Phe Gln Lys Ala Lys 305 310 315 320 Glu Arg Leu Glu AlaLys His Arg Glu Arg Met Ser Gln Val Met Arg 325 330 335 Glu Trp Glu GluAla Glu Arg Gln Ala Lys Asn Leu Pro Lys Ala Asp 340 345 350 Lys Lys AlaVal Ile Gln His Phe Gln Glu Lys Val Glu Ser Leu Glu 355 360 365 Gln GluAla Ala Asn Glu Arg Gln Gln Leu Val Glu Thr His Met Ala 370 375 380 ArgVal Glu Ala Met Leu Asn Asp Arg Arg Arg Leu Ala Leu Glu Asn 385 390 395400 Tyr Ile Thr Ala Leu Gln Ala Val Pro Pro Arg Pro Arg His Val Phe 405410 415 Asn Met Leu Lys Lys Tyr Val Arg Ala Glu Gln Lys Asp Arg Gln His420 425 430 Thr Leu Lys His Phe Glu His Val Arg Met Val Asp Pro Lys LysAla 435 440 445 Ala Gln Ile Arg Ser Gln Val Met Thr His Leu Arg Val IleTyr Glu 450 455 460 Arg Met Asn Gln Ser Leu Ser Leu Leu Tyr Asn Val ProAla Val Ala 465 470 475 480 Glu Glu Ile Gln Asp Glu Val Asp Glu Leu LeuGln Lys Glu Gln Asn 485 490 495 Tyr Ser Asp Asp Val Leu Ala Asn Met IleSer Glu Pro Arg Ile Ser 500 505 510 Tyr Gly Asn Asp Ala Leu Met Pro SerLeu Thr Glu Thr Lys Thr Thr 515 520 525 Val Glu Leu Leu Pro Val Asn GlyGlu Phe Ser Leu Asp Asp Leu Gln 530 535 540 Pro Trp His Ser Phe Gly AlaAsp Ser Val Pro Ala Asn Thr Glu Asn 545 550 555 560 Glu Val Glu Pro ValAsp Ala Arg Pro Ala Ala Asp Arg Gly Leu Thr 565 570 575 Thr Arg Pro GlySer Gly Leu Thr Asn Ile Lys Thr Glu Glu Ile Ser 580 585 590 Glu Val LysMet Asp Ala Glu Phe Arg His Asp Ser Gly Tyr Glu Val 595 600 605 His HisGln Lys Leu Val Phe Phe Ala Glu Asp Val Gly Ser Asn Lys 610 615 620 GlyAla Ile Ile Gly Leu Met Val Gly Gly Val Val Ile Ala Thr Val 625 630 635640 Ile Val Ile Thr Leu Val Met Leu Lys Lys Lys Gln Tyr Thr Ser Ile 645650 655 His His Gly Val Val Glu Val Asp Ala Ala Val Thr Pro Glu Glu Arg660 665 670 His Leu Ser Lys Met Gln Gln Asn Gly Tyr Glu Asn Pro Thr TyrLys 675 680 685 Phe Phe Glu Gln Met Gln Asn Lys Lys 690 695 17 2094 DNAHomo sapiens 17 atgctgcccg gtttggcact gctcctgctg gccgcctgga cggctcgggcgctggaggta 60 cccactgatg gtaatgctgg cctgctggct gaaccccaga ttgccatgttctgtggcaga 120 ctgaacatgc acatgaatgt ccagaatggg aagtgggatt cagatccatcagggaccaaa 180 acctgcattg ataccaagga aggcatcctg cagtattgcc aagaagtctaccctgaactg 240 cagatcacca atgtggtaga agccaaccaa ccagtgacca tccagaactggtgcaagcgg 300 ggccgcaagc agtgcaagac ccatccccac tttgtgattc cctaccgctgcttagttggt 360 gagtttgtaa gtgatgccct tctcgttcct gacaagtgca aattcttacaccaggagagg 420 atggatgttt gcgaaactca tcttcactgg cacaccgtcg ccaaagagacatgcagtgag 480 aagagtacca acttgcatga ctacggcatg ttgctgccct gcggaattgacaagttccga 540 ggggtagagt ttgtgtgttg cccactggct gaagaaagtg acaatgtggattctgctgat 600 gcggaggagg atgactcgga tgtctggtgg ggcggagcag acacagactatgcagatggg 660 agtgaagaca aagtagtaga agtagcagag gaggaagaag tggctgaggtggaagaagaa 720 gaagccgatg atgacgagga cgatgaggat ggtgatgagg tagaggaagaggctgaggaa 780 ccctacgaag aagccacaga gagaaccacc agcattgcca ccaccaccaccaccaccaca 840 gagtctgtgg aagaggtggt tcgagttcct acaacagcag ccagtacccctgatgccgtt 900 gacaagtatc tcgagacacc tggggatgag aatgaacatg cccatttccagaaagccaaa 960 gagaggcttg aggccaagca ccgagagaga atgtcccagg tcatgagagaatgggaagag 1020 gcagaacgtc aagcaaagaa cttgcctaaa gctgataaga aggcagttatccagcatttc 1080 caggagaaag tggaatcttt ggaacaggaa gcagccaacg agagacagcagctggtggag 1140 acacacatgg ccagagtgga agccatgctc aatgaccgcc gccgcctggccctggagaac 1200 tacatcaccg ctctgcaggc tgttcctcct cggcctcgtc acgtgttcaatatgctaaag 1260 aagtatgtcc gcgcagaaca gaaggacaga cagcacaccc taaagcatttcgagcatgtg 1320 cgcatggtgg atcccaagaa agccgctcag atccggtccc aggttatgacacacctccgt 1380 gtgatttatg agcgcatgaa tcagtctctc tccctgctct acaacgtgcctgcagtggcc 1440 gaggagattc aggatgaagt tgatgagctg cttcagaaag agcaaaactattcagatgac 1500 gtcttggcca acatgattag tgaaccaagg atcagttacg gaaacgatgctctcatgcca 1560 tctttgaccg aaacgaaaac caccgtggag ctccttcccg tgaatggagagttcagcctg 1620 gacgatctcc agccgtggca ttcttttggg gctgactctg tgccagccaacacagaaaac 1680 gaagttgagc ctgttgatgc ccgccctgct gccgaccgag gactgaccactcgaccaggt 1740 tctgggttga caaatatcaa gacggaggag atctctgaag tgaatctggatgcagaattc 1800 cgacatgact caggatatga agttcatcat caaaaattgg tgttctttgcagaagatgtg 1860 ggttcaaaca aaggtgcaat cattggactc atggtgggcg gtgttgtcatagcgacagtg 1920 atcgtcatca ccttggtgat gctgaagaag aaacagtaca catccattcatcatggtgtg 1980 gtggaggttg acgccgctgt caccccagag gagcgccacc tgtccaagatgcagcagaac 2040 ggctacgaaa atccaaccta caagttcttt gagcagatgc agaacaagaagtag 2094 18 697 PRT Homo sapiens 18 Met Leu Pro Gly Leu Ala Leu Leu LeuLeu Ala Ala Trp Thr Ala Arg 1 5 10 15 Ala Leu Glu Val Pro Thr Asp GlyAsn Ala Gly Leu Leu Ala Glu Pro 20 25 30 Gln Ile Ala Met Phe Cys Gly ArgLeu Asn Met His Met Asn Val Gln 35 40 45 Asn Gly Lys Trp Asp Ser Asp ProSer Gly Thr Lys Thr Cys Ile Asp 50 55 60 Thr Lys Glu Gly Ile Leu Gln TyrCys Gln Glu Val Tyr Pro Glu Leu 65 70 75 80 Gln Ile Thr Asn Val Val GluAla Asn Gln Pro Val Thr Ile Gln Asn 85 90 95 Trp Cys Lys Arg Gly Arg LysGln Cys Lys Thr His Pro His Phe Val 100 105 110 Ile Pro Tyr Arg Cys LeuVal Gly Glu Phe Val Ser Asp Ala Leu Leu 115 120 125 Val Pro Asp Lys CysLys Phe Leu His Gln Glu Arg Met Asp Val Cys 130 135 140 Glu Thr His LeuHis Trp His Thr Val Ala Lys Glu Thr Cys Ser Glu 145 150 155 160 Lys SerThr Asn Leu His Asp Tyr Gly Met Leu Leu Pro Cys Gly Ile 165 170 175 AspLys Phe Arg Gly Val Glu Phe Val Cys Cys Pro Leu Ala Glu Glu 180 185 190Ser Asp Asn Val Asp Ser Ala Asp Ala Glu Glu Asp Asp Ser Asp Val 195 200205 Trp Trp Gly Gly Ala Asp Thr Asp Tyr Ala Asp Gly Ser Glu Asp Lys 210215 220 Val Val Glu Val Ala Glu Glu Glu Glu Val Ala Glu Val Glu Glu Glu225 230 235 240 Glu Ala Asp Asp Asp Glu Asp Asp Glu Asp Gly Asp Glu ValGlu Glu 245 250 255 Glu Ala Glu Glu Pro Tyr Glu Glu Ala Thr Glu Arg ThrThr Ser Ile 260 265 270 Ala Thr Thr Thr Thr Thr Thr Thr Glu Ser Val GluGlu Val Val Arg 275 280 285 Val Pro Thr Thr Ala Ala Ser Thr Pro Asp AlaVal Asp Lys Tyr Leu 290 295 300 Glu Thr Pro Gly Asp Glu Asn Glu His AlaHis Phe Gln Lys Ala Lys 305 310 315 320 Glu Arg Leu Glu Ala Lys His ArgGlu Arg Met Ser Gln Val Met Arg 325 330 335 Glu Trp Glu Glu Ala Glu ArgGln Ala Lys Asn Leu Pro Lys Ala Asp 340 345 350 Lys Lys Ala Val Ile GlnHis Phe Gln Glu Lys Val Glu Ser Leu Glu 355 360 365 Gln Glu Ala Ala AsnGlu Arg Gln Gln Leu Val Glu Thr His Met Ala 370 375 380 Arg Val Glu AlaMet Leu Asn Asp Arg Arg Arg Leu Ala Leu Glu Asn 385 390 395 400 Tyr IleThr Ala Leu Gln Ala Val Pro Pro Arg Pro Arg His Val Phe 405 410 415 AsnMet Leu Lys Lys Tyr Val Arg Ala Glu Gln Lys Asp Arg Gln His 420 425 430Thr Leu Lys His Phe Glu His Val Arg Met Val Asp Pro Lys Lys Ala 435 440445 Ala Gln Ile Arg Ser Gln Val Met Thr His Leu Arg Val Ile Tyr Glu 450455 460 Arg Met Asn Gln Ser Leu Ser Leu Leu Tyr Asn Val Pro Ala Val Ala465 470 475 480 Glu Glu Ile Gln Asp Glu Val Asp Glu Leu Leu Gln Lys GluGln Asn 485 490 495 Tyr Ser Asp Asp Val Leu Ala Asn Met Ile Ser Glu ProArg Ile Ser 500 505 510 Tyr Gly Asn Asp Ala Leu Met Pro Ser Leu Thr GluThr Lys Thr Thr 515 520 525 Val Glu Leu Leu Pro Val Asn Gly Glu Phe SerLeu Asp Asp Leu Gln 530 535 540 Pro Trp His Ser Phe Gly Ala Asp Ser ValPro Ala Asn Thr Glu Asn 545 550 555 560 Glu Val Glu Pro Val Asp Ala ArgPro Ala Ala Asp Arg Gly Leu Thr 565 570 575 Thr Arg Pro Gly Ser Gly LeuThr Asn Ile Lys Thr Glu Glu Ile Ser 580 585 590 Glu Val Asn Leu Asp AlaGlu Phe Arg His Asp Ser Gly Tyr Glu Val 595 600 605 His His Gln Lys LeuVal Phe Phe Ala Glu Asp Val Gly Ser Asn Lys 610 615 620 Gly Ala Ile IleGly Leu Met Val Gly Gly Val Val Ile Ala Thr Val 625 630 635 640 Ile ValIle Thr Leu Val Met Leu Lys Lys Lys Gln Tyr Thr Ser Ile 645 650 655 HisHis Gly Val Val Glu Val Asp Ala Ala Val Thr Pro Glu Glu Arg 660 665 670His Leu Ser Lys Met Gln Gln Asn Gly Tyr Glu Asn Pro Thr Tyr Lys 675 680685 Phe Phe Glu Gln Met Gln Asn Lys Lys 690 695 19 2094 DNA Homo sapiens19 atgctgcccg gtttggcact gctcctgctg gccgcctgga cggctcgggc gctggaggta 60cccactgatg gtaatgctgg cctgctggct gaaccccaga ttgccatgtt ctgtggcaga 120ctgaacatgc acatgaatgt ccagaatggg aagtgggatt cagatccatc agggaccaaa 180acctgcattg ataccaagga aggcatcctg cagtattgcc aagaagtcta ccctgaactg 240cagatcacca atgtggtaga agccaaccaa ccagtgacca tccagaactg gtgcaagcgg 300ggccgcaagc agtgcaagac ccatccccac tttgtgattc cctaccgctg cttagttggt 360gagtttgtaa gtgatgccct tctcgttcct gacaagtgca aattcttaca ccaggagagg 420atggatgttt gcgaaactca tcttcactgg cacaccgtcg ccaaagagac atgcagtgag 480aagagtacca acttgcatga ctacggcatg ttgctgccct gcggaattga caagttccga 540ggggtagagt ttgtgtgttg cccactggct gaagaaagtg acaatgtgga ttctgctgat 600gcggaggagg atgactcgga tgtctggtgg ggcggagcag acacagacta tgcagatggg 660agtgaagaca aagtagtaga agtagcagag gaggaagaag tggctgaggt ggaagaagaa 720gaagccgatg atgacgagga cgatgaggat ggtgatgagg tagaggaaga ggctgaggaa 780ccctacgaag aagccacaga gagaaccacc agcattgcca ccaccaccac caccaccaca 840gagtctgtgg aagaggtggt tcgagttcct acaacagcag ccagtacccc tgatgccgtt 900gacaagtatc tcgagacacc tggggatgag aatgaacatg cccatttcca gaaagccaaa 960gagaggcttg aggccaagca ccgagagaga atgtcccagg tcatgagaga atgggaagag 1020gcagaacgtc aagcaaagaa cttgcctaaa gctgataaga aggcagttat ccagcatttc 1080caggagaaag tggaatcttt ggaacaggaa gcagccaacg agagacagca gctggtggag 1140acacacatgg ccagagtgga agccatgctc aatgaccgcc gccgcctggc cctggagaac 1200tacatcaccg ctctgcaggc tgttcctcct cggcctcgtc acgtgttcaa tatgctaaag 1260aagtatgtcc gcgcagaaca gaaggacaga cagcacaccc taaagcattt cgagcatgtg 1320cgcatggtgg atcccaagaa agccgctcag atccggtccc aggttatgac acacctccgt 1380gtgatttatg agcgcatgaa tcagtctctc tccctgctct acaacgtgcc tgcagtggcc 1440gaggagattc aggatgaagt tgatgagctg cttcagaaag agcaaaacta ttcagatgac 1500gtcttggcca acatgattag tgaaccaagg atcagttacg gaaacgatgc tctcatgcca 1560tctttgaccg aaacgaaaac caccgtggag ctccttcccg tgaatggaga gttcagcctg 1620gacgatctcc agccgtggca ttcttttggg gctgactctg tgccagccaa cacagaaaac 1680gaagttgagc ctgttgatgc ccgccctgct gccgaccgag gactgaccac tcgaccaggt 1740tctgggttga caaatatcaa gacggaggag atctctgaag tgaagatgga tgcagaattc 1800cgacatgact caggatatga agttcatcat caaaaattgg tgttctttgc agaagatgtg 1860ggttcaaaca aaggtgcaat cattggactc atggtgggcg gtgttgtcat agcgacagtg 1920atcttcatca ccttggtgat gctgaagaag aaacagtaca catccattca tcatggtgtg 1980gtggaggttg acgccgctgt caccccagag gagcgccacc tgtccaagat gcagcagaac 2040ggctacgaaa atccaaccta caagttcttt gagcagatgc agaacaagaa gtag 2094 20 697PRT Homo sapiens 20 Met Leu Pro Gly Leu Ala Leu Leu Leu Leu Ala Ala TrpThr Ala Arg 1 5 10 15 Ala Leu Glu Val Pro Thr Asp Gly Asn Ala Gly LeuLeu Ala Glu Pro 20 25 30 Gln Ile Ala Met Phe Cys Gly Arg Leu Asn Met HisMet Asn Val Gln 35 40 45 Asn Gly Lys Trp Asp Ser Asp Pro Ser Gly Thr LysThr Cys Ile Asp 50 55 60 Thr Lys Glu Gly Ile Leu Gln Tyr Cys Gln Glu ValTyr Pro Glu Leu 65 70 75 80 Gln Ile Thr Asn Val Val Glu Ala Asn Gln ProVal Thr Ile Gln Asn 85 90 95 Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys ThrHis Pro His Phe Val 100 105 110 Ile Pro Tyr Arg Cys Leu Val Gly Glu PheVal Ser Asp Ala Leu Leu 115 120 125 Val Pro Asp Lys Cys Lys Phe Leu HisGln Glu Arg Met Asp Val Cys 130 135 140 Glu Thr His Leu His Trp His ThrVal Ala Lys Glu Thr Cys Ser Glu 145 150 155 160 Lys Ser Thr Asn Leu HisAsp Tyr Gly Met Leu Leu Pro Cys Gly Ile 165 170 175 Asp Lys Phe Arg GlyVal Glu Phe Val Cys Cys Pro Leu Ala Glu Glu 180 185 190 Ser Asp Asn ValAsp Ser Ala Asp Ala Glu Glu Asp Asp Ser Asp Val 195 200 205 Trp Trp GlyGly Ala Asp Thr Asp Tyr Ala Asp Gly Ser Glu Asp Lys 210 215 220 Val ValGlu Val Ala Glu Glu Glu Glu Val Ala Glu Val Glu Glu Glu 225 230 235 240Glu Ala Asp Asp Asp Glu Asp Asp Glu Asp Gly Asp Glu Val Glu Glu 245 250255 Glu Ala Glu Glu Pro Tyr Glu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260265 270 Ala Thr Thr Thr Thr Thr Thr Thr Glu Ser Val Glu Glu Val Val Arg275 280 285 Val Pro Thr Thr Ala Ala Ser Thr Pro Asp Ala Val Asp Lys TyrLeu 290 295 300 Glu Thr Pro Gly Asp Glu Asn Glu His Ala His Phe Gln LysAla Lys 305 310 315 320 Glu Arg Leu Glu Ala Lys His Arg Glu Arg Met SerGln Val Met Arg 325 330 335 Glu Trp Glu Glu Ala Glu Arg Gln Ala Lys AsnLeu Pro Lys Ala Asp 340 345 350 Lys Lys Ala Val Ile Gln His Phe Gln GluLys Val Glu Ser Leu Glu 355 360 365 Gln Glu Ala Ala Asn Glu Arg Gln GlnLeu Val Glu Thr His Met Ala 370 375 380 Arg Val Glu Ala Met Leu Asn AspArg Arg Arg Leu Ala Leu Glu Asn 385 390 395 400 Tyr Ile Thr Ala Leu GlnAla Val Pro Pro Arg Pro Arg His Val Phe 405 410 415 Asn Met Leu Lys LysTyr Val Arg Ala Glu Gln Lys Asp Arg Gln His 420 425 430 Thr Leu Lys HisPhe Glu His Val Arg Met Val Asp Pro Lys Lys Ala 435 440 445 Ala Gln IleArg Ser Gln Val Met Thr His Leu Arg Val Ile Tyr Glu 450 455 460 Arg MetAsn Gln Ser Leu Ser Leu Leu Tyr Asn Val Pro Ala Val Ala 465 470 475 480Glu Glu Ile Gln Asp Glu Val Asp Glu Leu Leu Gln Lys Glu Gln Asn 485 490495 Tyr Ser Asp Asp Val Leu Ala Asn Met Ile Ser Glu Pro Arg Ile Ser 500505 510 Tyr Gly Asn Asp Ala Leu Met Pro Ser Leu Thr Glu Thr Lys Thr Thr515 520 525 Val Glu Leu Leu Pro Val Asn Gly Glu Phe Ser Leu Asp Asp LeuGln 530 535 540 Pro Trp His Ser Phe Gly Ala Asp Ser Val Pro Ala Asn ThrGlu Asn 545 550 555 560 Glu Val Glu Pro Val Asp Ala Arg Pro Ala Ala AspArg Gly Leu Thr 565 570 575 Thr Arg Pro Gly Ser Gly Leu Thr Asn Ile LysThr Glu Glu Ile Ser 580 585 590 Glu Val Lys Met Asp Ala Glu Phe Arg HisAsp Ser Gly Tyr Glu Val 595 600 605 His His Gln Lys Leu Val Phe Phe AlaGlu Asp Val Gly Ser Asn Lys 610 615 620 Gly Ala Ile Ile Gly Leu Met ValGly Gly Val Val Ile Ala Thr Val 625 630 635 640 Ile Phe Ile Thr Leu ValMet Leu Lys Lys Lys Gln Tyr Thr Ser Ile 645 650 655 His His Gly Val ValGlu Val Asp Ala Ala Val Thr Pro Glu Glu Arg 660 665 670 His Leu Ser LysMet Gln Gln Asn Gly Tyr Glu Asn Pro Thr Tyr Lys 675 680 685 Phe Phe GluGln Met Gln Asn Lys Lys 690 695 21 1341 DNA Homo sapiens 21 atggctagcatgactggtgg acagcaaatg ggtcgcggat ccacccagca cggcatccgg 60 ctgcccctgcgcagcggcct ggggggcgcc cccctggggc tgcggctgcc ccgggagacc 120 gacgaagagcccgaggagcc cggccggagg ggcagctttg tggagatggt ggacaacctg 180 aggggcaagtcggggcaggg ctactacgtg gagatgaccg tgggcagccc cccgcagacg 240 ctcaacatcctggtggatac aggcagcagt aactttgcag tgggtgctgc cccccacccc 300 ttcctgcatcgctactacca gaggcagctg tccagcacat accgggacct ccggaagggt 360 gtgtatgtgccctacaccca gggcaagtgg gaaggggagc tgggcaccga cctggtaagc 420 atcccccatggccccaacgt cactgtgcgt gccaacattg ctgccatcac tgaatcagac 480 aagttcttcatcaacggctc caactgggaa ggcatcctgg ggctggccta tgctgagatt 540 gccaggcctgacgactccct ggagcctttc tttgactctc tggtaaagca gacccacgtt 600 cccaacctcttctccctgca cctttgtggt gctggcttcc ccctcaacca gtctgaagtg 660 ctggcctctgtcggagggag catgatcatt ggaggtatcg accactcgct gtacacaggc 720 agtctctggtatacacccat ccggcgggag tggtattatg aggtcatcat tgtgcgggtg 780 gagatcaatggacaggatct gaaaatggac tgcaaggagt acaactatga caagagcatt 840 gtggacagtggcaccaccaa ccttcgtttg cccaagaaag tgtttgaagc tgcagtcaaa 900 tccatcaaggcagcctcctc cacggagaag ttccctgatg gtttctggct aggagagcag 960 ctggtgtgctggcaagcagg caccacccct tggaacattt tcccagtcat ctcactctac 1020 ctaatgggtgaggttaccaa ccagtccttc cgcatcacca tccttccgca gcaatacctg 1080 cggccagtggaagatgtggc cacgtcccaa gacgactgtt acaagtttgc catctcacag 1140 tcatccacgggcactgttat gggagctgtt atcatggagg gcttctacgt tgtctttgat 1200 cgggcccgaaaacgaattgg ctttgctgtc agcgcttgcc atgtgcacga tgagttcagg 1260 acggcagcggtggaaggccc ttttgtcacc ttggacatgg aagactgtgg ctacaacatt 1320 ccacagacagatgagtcatg a 1341 22 446 PRT Homo sapiens 22 Met Ala Ser Met Thr Gly GlyGln Gln Met Gly Arg Gly Ser Thr Gln 1 5 10 15 His Gly Ile Arg Leu ProLeu Arg Ser Gly Leu Gly Gly Ala Pro Leu 20 25 30 Gly Leu Arg Leu Pro ArgGlu Thr Asp Glu Glu Pro Glu Glu Pro Gly 35 40 45 Arg Arg Gly Ser Phe ValGlu Met Val Asp Asn Leu Arg Gly Lys Ser 50 55 60 Gly Gln Gly Tyr Tyr ValGlu Met Thr Val Gly Ser Pro Pro Gln Thr 65 70 75 80 Leu Asn Ile Leu ValAsp Thr Gly Ser Ser Asn Phe Ala Val Gly Ala 85 90 95 Ala Pro His Pro PheLeu His Arg Tyr Tyr Gln Arg Gln Leu Ser Ser 100 105 110 Thr Tyr Arg AspLeu Arg Lys Gly Val Tyr Val Pro Tyr Thr Gln Gly 115 120 125 Lys Trp GluGly Glu Leu Gly Thr Asp Leu Val Ser Ile Pro His Gly 130 135 140 Pro AsnVal Thr Val Arg Ala Asn Ile Ala Ala Ile Thr Glu Ser Asp 145 150 155 160Lys Phe Phe Ile Asn Gly Ser Asn Trp Glu Gly Ile Leu Gly Leu Ala 165 170175 Tyr Ala Glu Ile Ala Arg Pro Asp Asp Ser Leu Glu Pro Phe Phe Asp 180185 190 Ser Leu Val Lys Gln Thr His Val Pro Asn Leu Phe Ser Leu His Leu195 200 205 Cys Gly Ala Gly Phe Pro Leu Asn Gln Ser Glu Val Leu Ala SerVal 210 215 220 Gly Gly Ser Met Ile Ile Gly Gly Ile Asp His Ser Leu TyrThr Gly 225 230 235 240 Ser Leu Trp Tyr Thr Pro Ile Arg Arg Glu Trp TyrTyr Glu Val Ile 245 250 255 Ile Val Arg Val Glu Ile Asn Gly Gln Asp LeuLys Met Asp Cys Lys 260 265 270 Glu Tyr Asn Tyr Asp Lys Ser Ile Val AspSer Gly Thr Thr Asn Leu 275 280 285 Arg Leu Pro Lys Lys Val Phe Glu AlaAla Val Lys Ser Ile Lys Ala 290 295 300 Ala Ser Ser Thr Glu Lys Phe ProAsp Gly Phe Trp Leu Gly Glu Gln 305 310 315 320 Leu Val Cys Trp Gln AlaGly Thr Thr Pro Trp Asn Ile Phe Pro Val 325 330 335 Ile Ser Leu Tyr LeuMet Gly Glu Val Thr Asn Gln Ser Phe Arg Ile 340 345 350 Thr Ile Leu ProGln Gln Tyr Leu Arg Pro Val Glu Asp Val Ala Thr 355 360 365 Ser Gln AspAsp Cys Tyr Lys Phe Ala Ile Ser Gln Ser Ser Thr Gly 370 375 380 Thr ValMet Gly Ala Val Ile Met Glu Gly Phe Tyr Val Val Phe Asp 385 390 395 400Arg Ala Arg Lys Arg Ile Gly Phe Ala Val Ser Ala Cys His Val His 405 410415 Asp Glu Phe Arg Thr Ala Ala Val Glu Gly Pro Phe Val Thr Leu Asp 420425 430 Met Glu Asp Cys Gly Tyr Asn Ile Pro Gln Thr Asp Glu Ser 435 440445 23 1380 DNA Homo sapiens 23 atggctagca tgactggtgg acagcaaatgggtcgcggat cgatgactat ctctgactct 60 ccgcgtgaac aggacggatc cacccagcacggcatccggc tgcccctgcg cagcggcctg 120 gggggcgccc ccctggggct gcggctgccccgggagaccg acgaagagcc cgaggagccc 180 ggccggaggg gcagctttgt ggagatggtggacaacctga ggggcaagtc ggggcagggc 240 tactacgtgg agatgaccgt gggcagccccccgcagacgc tcaacatcct ggtggataca 300 ggcagcagta actttgcagt gggtgctgccccccacccct tcctgcatcg ctactaccag 360 aggcagctgt ccagcacata ccgggacctccggaagggtg tgtatgtgcc ctacacccag 420 ggcaagtggg aaggggagct gggcaccgacctggtaagca tcccccatgg ccccaacgtc 480 actgtgcgtg ccaacattgc tgccatcactgaatcagaca agttcttcat caacggctcc 540 aactgggaag gcatcctggg gctggcctatgctgagattg ccaggcctga cgactccctg 600 gagcctttct ttgactctct ggtaaagcagacccacgttc ccaacctctt ctccctgcac 660 ctttgtggtg ctggcttccc cctcaaccagtctgaagtgc tggcctctgt cggagggagc 720 atgatcattg gaggtatcga ccactcgctgtacacaggca gtctctggta tacacccatc 780 cggcgggagt ggtattatga ggtcatcattgtgcgggtgg agatcaatgg acaggatctg 840 aaaatggact gcaaggagta caactatgacaagagcattg tggacagtgg caccaccaac 900 cttcgtttgc ccaagaaagt gtttgaagctgcagtcaaat ccatcaaggc agcctcctcc 960 acggagaagt tccctgatgg tttctggctaggagagcagc tggtgtgctg gcaagcaggc 1020 accacccctt ggaacatttt cccagtcatctcactctacc taatgggtga ggttaccaac 1080 cagtccttcc gcatcaccat ccttccgcagcaatacctgc ggccagtgga agatgtggcc 1140 acgtcccaag acgactgtta caagtttgccatctcacagt catccacggg cactgttatg 1200 ggagctgtta tcatggaggg cttctacgttgtctttgatc gggcccgaaa acgaattggc 1260 tttgctgtca gcgcttgcca tgtgcacgatgagttcagga cggcagcggt ggaaggccct 1320 tttgtcacct tggacatgga agactgtggctacaacattc cacagacaga tgagtcatga 1380 24 459 PRT Homo sapiens 24 Met AlaSer Met Thr Gly Gly Gln Gln Met Gly Arg Gly Ser Met Thr 1 5 10 15 IleSer Asp Ser Pro Arg Glu Gln Asp Gly Ser Thr Gln His Gly Ile 20 25 30 ArgLeu Pro Leu Arg Ser Gly Leu Gly Gly Ala Pro Leu Gly Leu Arg 35 40 45 LeuPro Arg Glu Thr Asp Glu Glu Pro Glu Glu Pro Gly Arg Arg Gly 50 55 60 SerPhe Val Glu Met Val Asp Asn Leu Arg Gly Lys Ser Gly Gln Gly 65 70 75 80Tyr Tyr Val Glu Met Thr Val Gly Ser Pro Pro Gln Thr Leu Asn Ile 85 90 95Leu Val Asp Thr Gly Ser Ser Asn Phe Ala Val Gly Ala Ala Pro His 100 105110 Pro Phe Leu His Arg Tyr Tyr Gln Arg Gln Leu Ser Ser Thr Tyr Arg 115120 125 Asp Leu Arg Lys Gly Val Tyr Val Pro Tyr Thr Gln Gly Lys Trp Glu130 135 140 Gly Glu Leu Gly Thr Asp Leu Val Ser Ile Pro His Gly Pro AsnVal 145 150 155 160 Thr Val Arg Ala Asn Ile Ala Ala Ile Thr Glu Ser AspLys Phe Phe 165 170 175 Ile Asn Gly Ser Asn Trp Glu Gly Ile Leu Gly LeuAla Tyr Ala Glu 180 185 190 Ile Ala Arg Pro Asp Asp Ser Leu Glu Pro PhePhe Asp Ser Leu Val 195 200 205 Lys Gln Thr His Val Pro Asn Leu Phe SerLeu His Leu Cys Gly Ala 210 215 220 Gly Phe Pro Leu Asn Gln Ser Glu ValLeu Ala Ser Val Gly Gly Ser 225 230 235 240 Met Ile Ile Gly Gly Ile AspHis Ser Leu Tyr Thr Gly Ser Leu Trp 245 250 255 Tyr Thr Pro Ile Arg ArgGlu Trp Tyr Tyr Glu Val Ile Ile Val Arg 260 265 270 Val Glu Ile Asn GlyGln Asp Leu Lys Met Asp Cys Lys Glu Tyr Asn 275 280 285 Tyr Asp Lys SerIle Val Asp Ser Gly Thr Thr Asn Leu Arg Leu Pro 290 295 300 Lys Lys ValPhe Glu Ala Ala Val Lys Ser Ile Lys Ala Ala Ser Ser 305 310 315 320 ThrGlu Lys Phe Pro Asp Gly Phe Trp Leu Gly Glu Gln Leu Val Cys 325 330 335Trp Gln Ala Gly Thr Thr Pro Trp Asn Ile Phe Pro Val Ile Ser Leu 340 345350 Tyr Leu Met Gly Glu Val Thr Asn Gln Ser Phe Arg Ile Thr Ile Leu 355360 365 Pro Gln Gln Tyr Leu Arg Pro Val Glu Asp Val Ala Thr Ser Gln Asp370 375 380 Asp Cys Tyr Lys Phe Ala Ile Ser Gln Ser Ser Thr Gly Thr ValMet 385 390 395 400 Gly Ala Val Ile Met Glu Gly Phe Tyr Val Val Phe AspArg Ala Arg 405 410 415 Lys Arg Ile Gly Phe Ala Val Ser Ala Cys His ValHis Asp Glu Phe 420 425 430 Arg Thr Ala Ala Val Glu Gly Pro Phe Val ThrLeu Asp Met Glu Asp 435 440 445 Cys Gly Tyr Asn Ile Pro Gln Thr Asp GluSer 450 455 25 1302 DNA Homo sapiens 25 atgactcagc atggtattcg tctgccactgcgtagcggtc tgggtggtgc tccactgggt 60 ctgcgtctgc cccgggagac cgacgaagagcccgaggagc ccggccggag gggcagcttt 120 gtggagatgg tggacaacct gaggggcaagtcggggcagg gctactacgt ggagatgacc 180 gtgggcagcc ccccgcagac gctcaacatcctggtggata caggcagcag taactttgca 240 gtgggtgctg ccccccaccc cttcctgcatcgctactacc agaggcagct gtccagcaca 300 taccgggacc tccggaaggg tgtgtatgtgccctacaccc agggcaagtg ggaaggggag 360 ctgggcaccg acctggtaag catcccccatggccccaacg tcactgtgcg tgccaacatt 420 gctgccatca ctgaatcaga caagttcttcatcaacggct ccaactggga aggcatcctg 480 gggctggcct atgctgagat tgccaggcctgacgactccc tggagccttt ctttgactct 540 ctggtaaagc agacccacgt tcccaacctcttctccctgc acctttgtgg tgctggcttc 600 cccctcaacc agtctgaagt gctggcctctgtcggaggga gcatgatcat tggaggtatc 660 gaccactcgc tgtacacagg cagtctctggtatacaccca tccggcggga gtggtattat 720 gaggtcatca ttgtgcgggt ggagatcaatggacaggatc tgaaaatgga ctgcaaggag 780 tacaactatg acaagagcat tgtggacagtggcaccacca accttcgttt gcccaagaaa 840 gtgtttgaag ctgcagtcaa atccatcaaggcagcctcct ccacggagaa gttccctgat 900 ggtttctggc taggagagca gctggtgtgctggcaagcag gcaccacccc ttggaacatt 960 ttcccagtca tctcactcta cctaatgggtgaggttacca accagtcctt ccgcatcacc 1020 atccttccgc agcaatacct gcggccagtggaagatgtgg ccacgtccca agacgactgt 1080 tacaagtttg ccatctcaca gtcatccacgggcactgtta tgggagctgt tatcatggag 1140 ggcttctacg ttgtctttga tcgggcccgaaaacgaattg gctttgctgt cagcgcttgc 1200 catgtgcacg atgagttcag gacggcagcggtggaaggcc cttttgtcac cttggacatg 1260 gaagactgtg gctacaacat tccacagacagatgagtcat ga 1302 26 433 PRT Homo sapiens 26 Met Thr Gln His Gly IleArg Leu Pro Leu Arg Ser Gly Leu Gly Gly 1 5 10 15 Ala Pro Leu Gly LeuArg Leu Pro Arg Glu Thr Asp Glu Glu Pro Glu 20 25 30 Glu Pro Gly Arg ArgGly Ser Phe Val Glu Met Val Asp Asn Leu Arg 35 40 45 Gly Lys Ser Gly GlnGly Tyr Tyr Val Glu Met Thr Val Gly Ser Pro 50 55 60 Pro Gln Thr Leu AsnIle Leu Val Asp Thr Gly Ser Ser Asn Phe Ala 65 70 75 80 Val Gly Ala AlaPro His Pro Phe Leu His Arg Tyr Tyr Gln Arg Gln 85 90 95 Leu Ser Ser ThrTyr Arg Asp Leu Arg Lys Gly Val Tyr Val Pro Tyr 100 105 110 Thr Gln GlyLys Trp Glu Gly Glu Leu Gly Thr Asp Leu Val Ser Ile 115 120 125 Pro HisGly Pro Asn Val Thr Val Arg Ala Asn Ile Ala Ala Ile Thr 130 135 140 GluSer Asp Lys Phe Phe Ile Asn Gly Ser Asn Trp Glu Gly Ile Leu 145 150 155160 Gly Leu Ala Tyr Ala Glu Ile Ala Arg Pro Asp Asp Ser Leu Glu Pro 165170 175 Phe Phe Asp Ser Leu Val Lys Gln Thr His Val Pro Asn Leu Phe Ser180 185 190 Leu His Leu Cys Gly Ala Gly Phe Pro Leu Asn Gln Ser Glu ValLeu 195 200 205 Ala Ser Val Gly Gly Ser Met Ile Ile Gly Gly Ile Asp HisSer Leu 210 215 220 Tyr Thr Gly Ser Leu Trp Tyr Thr Pro Ile Arg Arg GluTrp Tyr Tyr 225 230 235 240 Glu Val Ile Ile Val Arg Val Glu Ile Asn GlyGln Asp Leu Lys Met 245 250 255 Asp Cys Lys Glu Tyr Asn Tyr Asp Lys SerIle Val Asp Ser Gly Thr 260 265 270 Thr Asn Leu Arg Leu Pro Lys Lys ValPhe Glu Ala Ala Val Lys Ser 275 280 285 Ile Lys Ala Ala Ser Ser Thr GluLys Phe Pro Asp Gly Phe Trp Leu 290 295 300 Gly Glu Gln Leu Val Cys TrpGln Ala Gly Thr Thr Pro Trp Asn Ile 305 310 315 320 Phe Pro Val Ile SerLeu Tyr Leu Met Gly Glu Val Thr Asn Gln Ser 325 330 335 Phe Arg Ile ThrIle Leu Pro Gln Gln Tyr Leu Arg Pro Val Glu Asp 340 345 350 Val Ala ThrSer Gln Asp Asp Cys Tyr Lys Phe Ala Ile Ser Gln Ser 355 360 365 Ser ThrGly Thr Val Met Gly Ala Val Ile Met Glu Gly Phe Tyr Val 370 375 380 ValPhe Asp Arg Ala Arg Lys Arg Ile Gly Phe Ala Val Ser Ala Cys 385 390 395400 His Val His Asp Glu Phe Arg Thr Ala Ala Val Glu Gly Pro Phe Val 405410 415 Thr Leu Asp Met Glu Asp Cys Gly Tyr Asn Ile Pro Gln Thr Asp Glu420 425 430 Ser 27 1278 DNA Homo sapiens 27 atggctagca tgactggtggacagcaaatg ggtcgcggat cgatgactat ctctgactct 60 ccgctggact ctggtatcgaaaccgacgga tcctttgtgg agatggtgga caacctgagg 120 ggcaagtcgg ggcagggctactacgtggag atgaccgtgg gcagcccccc gcagacgctc 180 aacatcctgg tggatacaggcagcagtaac tttgcagtgg gtgctgcccc ccaccccttc 240 ctgcatcgct actaccagaggcagctgtcc agcacatacc gggacctccg gaagggtgtg 300 tatgtgccct acacccagggcaagtgggaa ggggagctgg gcaccgacct ggtaagcatc 360 ccccatggcc ccaacgtcactgtgcgtgcc aacattgctg ccatcactga atcagacaag 420 ttcttcatca acggctccaactgggaaggc atcctggggc tggcctatgc tgagattgcc 480 aggcctgacg actccctggagcctttcttt gactctctgg taaagcagac ccacgttccc 540 aacctcttct ccctgcacctttgtggtgct ggcttccccc tcaaccagtc tgaagtgctg 600 gcctctgtcg gagggagcatgatcattgga ggtatcgacc actcgctgta cacaggcagt 660 ctctggtata cacccatccggcgggagtgg tattatgagg tcatcattgt gcgggtggag 720 atcaatggac aggatctgaaaatggactgc aaggagtaca actatgacaa gagcattgtg 780 gacagtggca ccaccaaccttcgtttgccc aagaaagtgt ttgaagctgc agtcaaatcc 840 atcaaggcag cctcctccacggagaagttc cctgatggtt tctggctagg agagcagctg 900 gtgtgctggc aagcaggcaccaccccttgg aacattttcc cagtcatctc actctaccta 960 atgggtgagg ttaccaaccagtccttccgc atcaccatcc ttccgcagca atacctgcgg 1020 ccagtggaag atgtggccacgtcccaagac gactgttaca agtttgccat ctcacagtca 1080 tccacgggca ctgttatgggagctgttatc atggagggct tctacgttgt ctttgatcgg 1140 gcccgaaaac gaattggctttgctgtcagc gcttgccatg tgcacgatga gttcaggacg 1200 gcagcggtgg aaggcccttttgtcaccttg gacatggaag actgtggcta caacattcca 1260 cagacagatg agtcatga1278 28 425 PRT Homo sapiens 28 Met Ala Ser Met Thr Gly Gly Gln Gln MetGly Arg Gly Ser Met Thr 1 5 10 15 Ile Ser Asp Ser Pro Leu Asp Ser GlyIle Glu Thr Asp Gly Ser Phe 20 25 30 Val Glu Met Val Asp Asn Leu Arg GlyLys Ser Gly Gln Gly Tyr Tyr 35 40 45 Val Glu Met Thr Val Gly Ser Pro ProGln Thr Leu Asn Ile Leu Val 50 55 60 Asp Thr Gly Ser Ser Asn Phe Ala ValGly Ala Ala Pro His Pro Phe 65 70 75 80 Leu His Arg Tyr Tyr Gln Arg GlnLeu Ser Ser Thr Tyr Arg Asp Leu 85 90 95 Arg Lys Gly Val Tyr Val Pro TyrThr Gln Gly Lys Trp Glu Gly Glu 100 105 110 Leu Gly Thr Asp Leu Val SerIle Pro His Gly Pro Asn Val Thr Val 115 120 125 Arg Ala Asn Ile Ala AlaIle Thr Glu Ser Asp Lys Phe Phe Ile Asn 130 135 140 Gly Ser Asn Trp GluGly Ile Leu Gly Leu Ala Tyr Ala Glu Ile Ala 145 150 155 160 Arg Pro AspAsp Ser Leu Glu Pro Phe Phe Asp Ser Leu Val Lys Gln 165 170 175 Thr HisVal Pro Asn Leu Phe Ser Leu His Leu Cys Gly Ala Gly Phe 180 185 190 ProLeu Asn Gln Ser Glu Val Leu Ala Ser Val Gly Gly Ser Met Ile 195 200 205Ile Gly Gly Ile Asp His Ser Leu Tyr Thr Gly Ser Leu Trp Tyr Thr 210 215220 Pro Ile Arg Arg Glu Trp Tyr Tyr Glu Val Ile Ile Val Arg Val Glu 225230 235 240 Ile Asn Gly Gln Asp Leu Lys Met Asp Cys Lys Glu Tyr Asn TyrAsp 245 250 255 Lys Ser Ile Val Asp Ser Gly Thr Thr Asn Leu Arg Leu ProLys Lys 260 265 270 Val Phe Glu Ala Ala Val Lys Ser Ile Lys Ala Ala SerSer Thr Glu 275 280 285 Lys Phe Pro Asp Gly Phe Trp Leu Gly Glu Gln LeuVal Cys Trp Gln 290 295 300 Ala Gly Thr Thr Pro Trp Asn Ile Phe Pro ValIle Ser Leu Tyr Leu 305 310 315 320 Met Gly Glu Val Thr Asn Gln Ser PheArg Ile Thr Ile Leu Pro Gln 325 330 335 Gln Tyr Leu Arg Pro Val Glu AspVal Ala Thr Ser Gln Asp Asp Cys 340 345 350 Tyr Lys Phe Ala Ile Ser GlnSer Ser Thr Gly Thr Val Met Gly Ala 355 360 365 Val Ile Met Glu Gly PheTyr Val Val Phe Asp Arg Ala Arg Lys Arg 370 375 380 Ile Gly Phe Ala ValSer Ala Cys His Val His Asp Glu Phe Arg Thr 385 390 395 400 Ala Ala ValGlu Gly Pro Phe Val Thr Leu Asp Met Glu Asp Cys Gly 405 410 415 Tyr AsnIle Pro Gln Thr Asp Glu Ser 420 425 29 1362 DNA Homo sapiens 29atggcccaag ccctgccctg gctcctgctg tggatgggcg cgggagtgct gcctgcccac 60ggcacccagc acggcatccg gctgcccctg cgcagcggcc tggggggcgc ccccctgggg 120ctgcggctgc cccgggagac cgacgaagag cccgaggagc ccggccggag gggcagcttt 180gtggagatgg tggacaacct gaggggcaag tcggggcagg gctactacgt ggagatgacc 240gtgggcagcc ccccgcagac gctcaacatc ctggtggata caggcagcag taactttgca 300gtgggtgctg ccccccaccc cttcctgcat cgctactacc agaggcagct gtccagcaca 360taccgggacc tccggaaggg tgtgtatgtg ccctacaccc agggcaagtg ggaaggggag 420ctgggcaccg acctggtaag catcccccat ggccccaacg tcactgtgcg tgccaacatt 480gctgccatca ctgaatcaga caagttcttc atcaacggct ccaactggga aggcatcctg 540gggctggcct atgctgagat tgccaggcct gacgactccc tggagccttt ctttgactct 600ctggtaaagc agacccacgt tcccaacctc ttctccctgc acctttgtgg tgctggcttc 660cccctcaacc agtctgaagt gctggcctct gtcggaggga gcatgatcat tggaggtatc 720gaccactcgc tgtacacagg cagtctctgg tatacaccca tccggcggga gtggtattat 780gaggtcatca ttgtgcgggt ggagatcaat ggacaggatc tgaaaatgga ctgcaaggag 840tacaactatg acaagagcat tgtggacagt ggcaccacca accttcgttt gcccaagaaa 900gtgtttgaag ctgcagtcaa atccatcaag gcagcctcct ccacggagaa gttccctgat 960ggtttctggc taggagagca gctggtgtgc tggcaagcag gcaccacccc ttggaacatt 1020ttcccagtca tctcactcta cctaatgggt gaggttacca accagtcctt ccgcatcacc 1080atccttccgc agcaatacct gcggccagtg gaagatgtgg ccacgtccca agacgactgt 1140tacaagtttg ccatctcaca gtcatccacg ggcactgtta tgggagctgt tatcatggag 1200ggcttctacg ttgtctttga tcgggcccga aaacgaattg gctttgctgt cagcgcttgc 1260catgtgcacg atgagttcag gacggcagcg gtggaaggcc cttttgtcac cttggacatg 1320gaagactgtg gctacaacat tccacagaca gatgagtcat ga 1362 30 453 PRT Homosapiens 30 Met Ala Gln Ala Leu Pro Trp Leu Leu Leu Trp Met Gly Ala GlyVal 1 5 10 15 Leu Pro Ala His Gly Thr Gln His Gly Ile Arg Leu Pro LeuArg Ser 20 25 30 Gly Leu Gly Gly Ala Pro Leu Gly Leu Arg Leu Pro Arg GluThr Asp 35 40 45 Glu Glu Pro Glu Glu Pro Gly Arg Arg Gly Ser Phe Val GluMet Val 50 55 60 Asp Asn Leu Arg Gly Lys Ser Gly Gln Gly Tyr Tyr Val GluMet Thr 65 70 75 80 Val Gly Ser Pro Pro Gln Thr Leu Asn Ile Leu Val AspThr Gly Ser 85 90 95 Ser Asn Phe Ala Val Gly Ala Ala Pro His Pro Phe LeuHis Arg Tyr 100 105 110 Tyr Gln Arg Gln Leu Ser Ser Thr Tyr Arg Asp LeuArg Lys Gly Val 115 120 125 Tyr Val Pro Tyr Thr Gln Gly Lys Trp Glu GlyGlu Leu Gly Thr Asp 130 135 140 Leu Val Ser Ile Pro His Gly Pro Asn ValThr Val Arg Ala Asn Ile 145 150 155 160 Ala Ala Ile Thr Glu Ser Asp LysPhe Phe Ile Asn Gly Ser Asn Trp 165 170 175 Glu Gly Ile Leu Gly Leu AlaTyr Ala Glu Ile Ala Arg Pro Asp Asp 180 185 190 Ser Leu Glu Pro Phe PheAsp Ser Leu Val Lys Gln Thr His Val Pro 195 200 205 Asn Leu Phe Ser LeuGln Leu Cys Gly Ala Gly Phe Pro Leu Asn Gln 210 215 220 Ser Glu Val LeuAla Ser Val Gly Gly Ser Met Ile Ile Gly Gly Ile 225 230 235 240 Asp HisSer Leu Tyr Thr Gly Ser Leu Trp Tyr Thr Pro Ile Arg Arg 245 250 255 GluTrp Tyr Tyr Glu Val Ile Ile Val Arg Val Glu Ile Asn Gly Gln 260 265 270Asp Leu Lys Met Asp Cys Lys Glu Tyr Asn Tyr Asp Lys Ser Ile Val 275 280285 Asp Ser Gly Thr Thr Asn Leu Arg Leu Pro Lys Lys Val Phe Glu Ala 290295 300 Ala Val Lys Ser Ile Lys Ala Ala Ser Ser Thr Glu Lys Phe Pro Asp305 310 315 320 Gly Phe Trp Leu Gly Glu Gln Leu Val Cys Trp Gln Ala GlyThr Thr 325 330 335 Pro Trp Asn Ile Phe Pro Val Ile Ser Leu Tyr Leu MetGly Glu Val 340 345 350 Thr Asn Gln Ser Phe Arg Ile Thr Ile Leu Pro GlnGln Tyr Leu Arg 355 360 365 Pro Val Glu Asp Val Ala Thr Ser Gln Asp AspCys Tyr Lys Phe Ala 370 375 380 Ile Ser Gln Ser Ser Thr Gly Thr Val MetGly Ala Val Ile Met Glu 385 390 395 400 Gly Phe Tyr Val Val Phe Asp ArgAla Arg Lys Arg Ile Gly Phe Ala 405 410 415 Val Ser Ala Cys His Val HisAsp Glu Phe Arg Thr Ala Ala Val Glu 420 425 430 Gly Pro Phe Val Thr LeuAsp Met Glu Asp Cys Gly Tyr Asn Ile Pro 435 440 445 Gln Thr Asp Glu Ser450 31 1380 DNA Homo sapiens 31 atggcccaag ccctgccctg gctcctgctgtggatgggcg cgggagtgct gcctgcccac 60 ggcacccagc acggcatccg gctgcccctgcgcagcggcc tggggggcgc ccccctgggg 120 ctgcggctgc cccgggagac cgacgaagagcccgaggagc ccggccggag gggcagcttt 180 gtggagatgg tggacaacct gaggggcaagtcggggcagg gctactacgt ggagatgacc 240 gtgggcagcc ccccgcagac gctcaacatcctggtggata caggcagcag taactttgca 300 gtgggtgctg ccccccaccc cttcctgcatcgctactacc agaggcagct gtccagcaca 360 taccgggacc tccggaaggg tgtgtatgtgccctacaccc agggcaagtg ggaaggggag 420 ctgggcaccg acctggtaag catcccccatggccccaacg tcactgtgcg tgccaacatt 480 gctgccatca ctgaatcaga caagttcttcatcaacggct ccaactggga aggcatcctg 540 gggctggcct atgctgagat tgccaggcctgacgactccc tggagccttt ctttgactct 600 ctggtaaagc agacccacgt tcccaacctcttctccctgc acctttgtgg tgctggcttc 660 cccctcaacc agtctgaagt gctggcctctgtcggaggga gcatgatcat tggaggtatc 720 gaccactcgc tgtacacagg cagtctctggtatacaccca tccggcggga gtggtattat 780 gaggtcatca ttgtgcgggt ggagatcaatggacaggatc tgaaaatgga ctgcaaggag 840 tacaactatg acaagagcat tgtggacagtggcaccacca accttcgttt gcccaagaaa 900 gtgtttgaag ctgcagtcaa atccatcaaggcagcctcct ccacggagaa gttccctgat 960 ggtttctggc taggagagca gctggtgtgctggcaagcag gcaccacccc ttggaacatt 1020 ttcccagtca tctcactcta cctaatgggtgaggttacca accagtcctt ccgcatcacc 1080 atccttccgc agcaatacct gcggccagtggaagatgtgg ccacgtccca agacgactgt 1140 tacaagtttg ccatctcaca gtcatccacgggcactgtta tgggagctgt tatcatggag 1200 ggcttctacg ttgtctttga tcgggcccgaaaacgaattg gctttgctgt cagcgcttgc 1260 catgtgcacg atgagttcag gacggcagcggtggaaggcc cttttgtcac cttggacatg 1320 gaagactgtg gctacaacat tccacagacagatgagtcac agcagcagca gcagcagtga 1380 32 459 PRT Homo sapiens 32 Met AlaGln Ala Leu Pro Trp Leu Leu Leu Trp Met Gly Ala Gly Val 1 5 10 15 LeuPro Ala His Gly Thr Gln His Gly Ile Arg Leu Pro Leu Arg Ser 20 25 30 GlyLeu Gly Gly Ala Pro Leu Gly Leu Arg Leu Pro Arg Glu Thr Asp 35 40 45 GluGlu Pro Glu Glu Pro Gly Arg Arg Gly Ser Phe Val Glu Met Val 50 55 60 AspAsn Leu Arg Gly Lys Ser Gly Gln Gly Tyr Tyr Val Glu Met Thr 65 70 75 80Val Gly Ser Pro Pro Gln Thr Leu Asn Ile Leu Val Asp Thr Gly Ser 85 90 95Ser Asn Phe Ala Val Gly Ala Ala Pro His Pro Phe Leu His Arg Tyr 100 105110 Tyr Gln Arg Gln Leu Ser Ser Thr Tyr Arg Asp Leu Arg Lys Gly Val 115120 125 Tyr Val Pro Tyr Thr Gln Gly Lys Trp Glu Gly Glu Leu Gly Thr Asp130 135 140 Leu Val Ser Ile Pro His Gly Pro Asn Val Thr Val Arg Ala AsnIle 145 150 155 160 Ala Ala Ile Thr Glu Ser Asp Lys Phe Phe Ile Asn GlySer Asn Trp 165 170 175 Glu Gly Ile Leu Gly Leu Ala Tyr Ala Glu Ile AlaArg Pro Asp Asp 180 185 190 Ser Leu Glu Pro Phe Phe Asp Ser Leu Val LysGln Thr His Val Pro 195 200 205 Asn Leu Phe Ser Leu Gln Leu Cys Gly AlaGly Phe Pro Leu Asn Gln 210 215 220 Ser Glu Val Leu Ala Ser Val Gly GlySer Met Ile Ile Gly Gly Ile 225 230 235 240 Asp His Ser Leu Tyr Thr GlySer Leu Trp Tyr Thr Pro Ile Arg Arg 245 250 255 Glu Trp Tyr Tyr Glu ValIle Ile Val Arg Val Glu Ile Asn Gly Gln 260 265 270 Asp Leu Lys Met AspCys Lys Glu Tyr Asn Tyr Asp Lys Ser Ile Val 275 280 285 Asp Ser Gly ThrThr Asn Leu Arg Leu Pro Lys Lys Val Phe Glu Ala 290 295 300 Ala Val LysSer Ile Lys Ala Ala Ser Ser Thr Glu Lys Phe Pro Asp 305 310 315 320 GlyPhe Trp Leu Gly Glu Gln Leu Val Cys Trp Gln Ala Gly Thr Thr 325 330 335Pro Trp Asn Ile Phe Pro Val Ile Ser Leu Tyr Leu Met Gly Glu Val 340 345350 Thr Asn Gln Ser Phe Arg Ile Thr Ile Leu Pro Gln Gln Tyr Leu Arg 355360 365 Pro Val Glu Asp Val Ala Thr Ser Gln Asp Asp Cys Tyr Lys Phe Ala370 375 380 Ile Ser Gln Ser Ser Thr Gly Thr Val Met Gly Ala Val Ile MetGlu 385 390 395 400 Gly Phe Tyr Val Val Phe Asp Arg Ala Arg Lys Arg IleGly Phe Ala 405 410 415 Val Ser Ala Cys His Val His Asp Glu Phe Arg ThrAla Ala Val Glu 420 425 430 Gly Pro Phe Val Thr Leu Asp Met Glu Asp CysGly Tyr Asn Ile Pro 435 440 445 Gln Thr Asp Glu Ser His His His His HisHis 450 455 33 25 PRT Homo sapiens 33 Ser Glu Gln Gln Arg Arg Pro ArgAsp Pro Glu Val Val Asn Asp Glu 1 5 10 15 Ser Ser Leu Val Arg His ArgTrp Lys 20 25 34 19 PRT Homo sapiens 34 Ser Glu Gln Leu Arg Gln Gln HisAsp Asp Phe Ala Asp Asp Ile Ser 1 5 10 15 Leu Leu Lys 35 29 DNA Homosapiens 35 gtggatccac ccagcacggc atccggctg 29 36 36 DNA Homo sapiens 36gaaagctttc atgactcatc tgtctgtgga atgttg 36 37 39 DNA Homo sapiens 37gatcgatgac tatctctgac tctccgcgtg aacaggacg 39 38 39 DNA Homo sapiens 38gatccgtcct gttcacgcgg agagtcagag atagtcatc 39 39 77 DNA Artificialsequence Hu-Asp2 39 cggcatccgg ctgcccctgc gtagcggtct gggtggtgctccactgggtc tgcgtctgcc 60 ccgggagacc gacgaag 77 40 77 DNA Artificialsequence Hu-Asp2 40 cttcgtcggt ctcccggggc agacgcagac ccagtggagcaccacccaga ccgctacgca 60 ggggcagccg gatgccg 77 41 51 DNA Caspase-8Cleavage Site 41 gatcgatgac tatctctgac tctccgctgg actctggtat cgaaaccgacg 51 42 51 DNA Caspase-8 Cleavage Site 42 gatccgtcgg tttcgataccagagtccagc ggagagtcag agatagtcat c 51 43 32 DNA Homo sapiens 43aaggatcctt tgtggagatg gtggacaacc tg 32 44 36 DNA Homo sapiens 44gaaagctttc atgactcatc tgtctgtgga atgttg 36 45 24 DNA 6-His tag 45gatcgcatca tcaccatcac catg 24 46 24 DNA 6-His tag 46 gatccatggtgatggtgatg atgc 24 47 22 DNA Artificial sequence Primer 47 gactgaccactcgaccaggt tc 22 48 51 DNA Artificial sequence Primer 48 cgaattaaattccagcacac tggctacttc ttgttctgca tctcaaagaa c 51 49 26 DNA Artificialsequence Primer 49 cgaattaaat tccagcacac tggcta 26 50 1287 DNAArtificial sequence Hu-Asp2(b) delta TM 50 atggcccaag ccctgccctggctcctgctg tggatgggcg cgggagtgct gcctgcccac 60 ggcacccagc acggcatccggctgcccctg cgcagcggcc tggggggcgc ccccctgggg 120 ctgcggctgc cccgggagaccgacgaagag cccgaggagc ccggccggag gggcagcttt 180 gtggagatgg tggacaacctgaggggcaag tcggggcagg gctactacgt ggagatgacc 240 gtgggcagcc ccccgcagacgctcaacatc ctggtggata caggcagcag taactttgca 300 gtgggtgctg ccccccaccccttcctgcat cgctactacc agaggcagct gtccagcaca 360 taccgggacc tccggaagggtgtgtatgtg ccctacaccc agggcaagtg ggaaggggag 420 ctgggcaccg acctggtaagcatcccccat ggccccaacg tcactgtgcg tgccaacatt 480 gctgccatca ctgaatcagacaagttcttc atcaacggct ccaactggga aggcatcctg 540 gggctggcct atgctgagattgccaggctt tgtggtgctg gcttccccct caaccagtct 600 gaagtgctgg cctctgtcggagggagcatg atcattggag gtatcgacca ctcgctgtac 660 acaggcagtc tctggtatacacccatccgg cgggagtggt attatgaggt catcattgtg 720 cgggtggaga tcaatggacaggatctgaaa atggactgca aggagtacaa ctatgacaag 780 agcattgtgg acagtggcaccaccaacctt cgtttgccca agaaagtgtt tgaagctgca 840 gtcaaatcca tcaaggcagcctcctccacg gagaagttcc ctgatggttt ctggctagga 900 gagcagctgg tgtgctggcaagcaggcacc accccttgga acattttccc agtcatctca 960 ctctacctaa tgggtgaggttaccaaccag tccttccgca tcaccatcct tccgcagcaa 1020 tacctgcggc cagtggaagatgtggccacg tcccaagacg actgttacaa gtttgccatc 1080 tcacagtcat ccacgggcactgttatggga gctgttatca tggagggctt ctacgttgtc 1140 tttgatcggg cccgaaaacgaattggcttt gctgtcagcg cttgccatgt gcacgatgag 1200 ttcaggacgg cagcggtggaaggccctttt gtcaccttgg acatggaaga ctgtggctac 1260 aacattccac agacagatgagtcatga 1287 51 428 PRT Artificial sequence Hu-Asp2(b) delta TM 51 MetAla Gln Ala Leu Pro Trp Leu Leu Leu Trp Met Gly Ala Gly Val 1 5 10 15Leu Pro Ala His Gly Thr Gln His Gly Ile Arg Leu Pro Leu Arg Ser 20 25 30Gly Leu Gly Gly Ala Pro Leu Gly Leu Arg Leu Pro Arg Glu Thr Asp 35 40 45Glu Glu Pro Glu Glu Pro Gly Arg Arg Gly Ser Phe Val Glu Met Val 50 55 60Asp Asn Leu Arg Gly Lys Ser Gly Gln Gly Tyr Tyr Val Glu Met Thr 65 70 7580 Val Gly Ser Pro Pro Gln Thr Leu Asn Ile Leu Val Asp Thr Gly Ser 85 9095 Ser Asn Phe Ala Val Gly Ala Ala Pro His Pro Phe Leu His Arg Tyr 100105 110 Tyr Gln Arg Gln Leu Ser Ser Thr Tyr Arg Asp Leu Arg Lys Gly Val115 120 125 Tyr Val Pro Tyr Thr Gln Gly Lys Trp Glu Gly Glu Leu Gly ThrAsp 130 135 140 Leu Val Ser Ile Pro His Gly Pro Asn Val Thr Val Arg AlaAsn Ile 145 150 155 160 Ala Ala Ile Thr Glu Ser Asp Lys Phe Phe Ile AsnGly Ser Asn Trp 165 170 175 Glu Gly Ile Leu Gly Leu Ala Tyr Ala Glu IleAla Arg Leu Cys Gly 180 185 190 Ala Gly Phe Pro Leu Asn Gln Ser Glu ValLeu Ala Ser Val Gly Gly 195 200 205 Ser Met Ile Ile Gly Gly Ile Asp HisSer Leu Tyr Thr Gly Ser Leu 210 215 220 Trp Tyr Thr Pro Ile Arg Arg GluTrp Tyr Tyr Glu Val Ile Ile Val 225 230 235 240 Arg Val Glu Ile Asn GlyGln Asp Leu Lys Met Asp Cys Lys Glu Tyr 245 250 255 Asn Tyr Asp Lys SerIle Val Asp Ser Gly Thr Thr Asn Leu Arg Leu 260 265 270 Pro Lys Lys ValPhe Glu Ala Ala Val Lys Ser Ile Lys Ala Ala Ser 275 280 285 Ser Thr GluLys Phe Pro Asp Gly Phe Trp Leu Gly Glu Gln Leu Val 290 295 300 Cys TrpGln Ala Gly Thr Thr Pro Trp Asn Ile Phe Pro Val Ile Ser 305 310 315 320Leu Tyr Leu Met Gly Glu Val Thr Asn Gln Ser Phe Arg Ile Thr Ile 325 330335 Leu Pro Gln Gln Tyr Leu Arg Pro Val Glu Asp Val Ala Thr Ser Gln 340345 350 Asp Asp Cys Tyr Lys Phe Ala Ile Ser Gln Ser Ser Thr Gly Thr Val355 360 365 Met Gly Ala Val Ile Met Glu Gly Phe Tyr Val Val Phe Asp ArgAla 370 375 380 Arg Lys Arg Ile Gly Phe Ala Val Ser Ala Cys His Val HisAsp Glu 385 390 395 400 Phe Arg Thr Ala Ala Val Glu Gly Pro Phe Val ThrLeu Asp Met Glu 405 410 415 Asp Cys Gly Tyr Asn Ile Pro Gln Thr Asp GluSer 420 425 52 1305 DNA Artificial sequence Hu-Asp2(b) delta TM 52atggcccaag ccctgccctg gctcctgctg tggatgggcg cgggagtgct gcctgcccac 60ggcacccagc acggcatccg gctgcccctg cgcagcggcc tggggggcgc ccccctgggg 120ctgcggctgc cccgggagac cgacgaagag cccgaggagc ccggccggag gggcagcttt 180gtggagatgg tggacaacct gaggggcaag tcggggcagg gctactacgt ggagatgacc 240gtgggcagcc ccccgcagac gctcaacatc ctggtggata caggcagcag taactttgca 300gtgggtgctg ccccccaccc cttcctgcat cgctactacc agaggcagct gtccagcaca 360taccgggacc tccggaaggg tgtgtatgtg ccctacaccc agggcaagtg ggaaggggag 420ctgggcaccg acctggtaag catcccccat ggccccaacg tcactgtgcg tgccaacatt 480gctgccatca ctgaatcaga caagttcttc atcaacggct ccaactggga aggcatcctg 540gggctggcct atgctgagat tgccaggctt tgtggtgctg gcttccccct caaccagtct 600gaagtgctgg cctctgtcgg agggagcatg atcattggag gtatcgacca ctcgctgtac 660acaggcagtc tctggtatac acccatccgg cgggagtggt attatgaggt catcattgtg 720cgggtggaga tcaatggaca ggatctgaaa atggactgca aggagtacaa ctatgacaag 780agcattgtgg acagtggcac caccaacctt cgtttgccca agaaagtgtt tgaagctgca 840gtcaaatcca tcaaggcagc ctcctccacg gagaagttcc ctgatggttt ctggctagga 900gagcagctgg tgtgctggca agcaggcacc accccttgga acattttccc agtcatctca 960ctctacctaa tgggtgaggt taccaaccag tccttccgca tcaccatcct tccgcagcaa 1020tacctgcggc cagtggaaga tgtggccacg tcccaagacg actgttacaa gtttgccatc 1080tcacagtcat ccacgggcac tgttatggga gctgttatca tggagggctt ctacgttgtc 1140tttgatcggg cccgaaaacg aattggcttt gctgtcagcg cttgccatgt gcacgatgag 1200ttcaggacgg cagcggtgga aggccctttt gtcaccttgg acatggaaga ctgtggctac 1260aacattccac agacagatga gtcacagcag cagcagcagc agtga 1305 53 434 PRTArtificial sequence Hu-Asp2(b) delta TM 53 Met Ala Gln Ala Leu Pro TrpLeu Leu Leu Trp Met Gly Ala Gly Val 1 5 10 15 Leu Pro Ala His Gly ThrGln His Gly Ile Arg Leu Pro Leu Arg Ser 20 25 30 Gly Leu Gly Gly Ala ProLeu Gly Leu Arg Leu Pro Arg Glu Thr Asp 35 40 45 Glu Glu Pro Glu Glu ProGly Arg Arg Gly Ser Phe Val Glu Met Val 50 55 60 Asp Asn Leu Arg Gly LysSer Gly Gln Gly Tyr Tyr Val Glu Met Thr 65 70 75 80 Val Gly Ser Pro ProGln Thr Leu Asn Ile Leu Val Asp Thr Gly Ser 85 90 95 Ser Asn Phe Ala ValGly Ala Ala Pro His Pro Phe Leu His Arg Tyr 100 105 110 Tyr Gln Arg GlnLeu Ser Ser Thr Tyr Arg Asp Leu Arg Lys Gly Val 115 120 125 Tyr Val ProTyr Thr Gln Gly Lys Trp Glu Gly Glu Leu Gly Thr Asp 130 135 140 Leu ValSer Ile Pro His Gly Pro Asn Val Thr Val Arg Ala Asn Ile 145 150 155 160Ala Ala Ile Thr Glu Ser Asp Lys Phe Phe Ile Asn Gly Ser Asn Trp 165 170175 Glu Gly Ile Leu Gly Leu Ala Tyr Ala Glu Ile Ala Arg Leu Cys Gly 180185 190 Ala Gly Phe Pro Leu Asn Gln Ser Glu Val Leu Ala Ser Val Gly Gly195 200 205 Ser Met Ile Ile Gly Gly Ile Asp His Ser Leu Tyr Thr Gly SerLeu 210 215 220 Trp Tyr Thr Pro Ile Arg Arg Glu Trp Tyr Tyr Glu Val IleIle Val 225 230 235 240 Arg Val Glu Ile Asn Gly Gln Asp Leu Lys Met AspCys Lys Glu Tyr 245 250 255 Asn Tyr Asp Lys Ser Ile Val Asp Ser Gly ThrThr Asn Leu Arg Leu 260 265 270 Pro Lys Lys Val Phe Glu Ala Ala Val LysSer Ile Lys Ala Ala Ser 275 280 285 Ser Thr Glu Lys Phe Pro Asp Gly PheTrp Leu Gly Glu Gln Leu Val 290 295 300 Cys Trp Gln Ala Gly Thr Thr ProTrp Asn Ile Phe Pro Val Ile Ser 305 310 315 320 Leu Tyr Leu Met Gly GluVal Thr Asn Gln Ser Phe Arg Ile Thr Ile 325 330 335 Leu Pro Gln Gln TyrLeu Arg Pro Val Glu Asp Val Ala Thr Ser Gln 340 345 350 Asp Asp Cys TyrLys Phe Ala Ile Ser Gln Ser Ser Thr Gly Thr Val 355 360 365 Met Gly AlaVal Ile Met Glu Gly Phe Tyr Val Val Phe Asp Arg Ala 370 375 380 Arg LysArg Ile Gly Phe Ala Val Ser Ala Cys His Val His Asp Glu 385 390 395 400Phe Arg Thr Ala Ala Val Glu Gly Pro Phe Val Thr Leu Asp Met Glu 405 410415 Asp Cys Gly Tyr Asn Ile Pro Gln Thr Asp Glu Ser His His His His 420425 430 His His 54 2310 DNA Homo sapiens 54 atgctgcccg gtttggcactgctcctgctg gccgcctgga cggctcgggc gctggaggta 60 cccactgatg gtaatgctggcctgctggct gaaccccaga ttgccatgtt ctgtggcaga 120 ctgaacatgc acatgaatgtccagaatggg aagtgggatt cagatccatc agggaccaaa 180 acctgcattg ataccaaggaaggcatcctg cagtattgcc aagaagtcta ccctgaactg 240 cagatcacca atgtggtagaagccaaccaa ccagtgacca tccagaactg gtgcaagcgg 300 ggccgcaagc agtgcaagacccatccccac tttgtgattc cctaccgctg cttagttggt 360 gagtttgtaa gtgatgcccttctcgttcct gacaagtgca aattcttaca ccaggagagg 420 atggatgttt gcgaaactcatcttcactgg cacaccgtcg ccaaagagac atgcagtgag 480 aagagtacca acttgcatgactacggcatg ttgctgccct gcggaattga caagttccga 540 ggggtagagt ttgtgtgttgcccactggct gaagaaagtg acaatgtgga ttctgctgat 600 gcggaggagg atgactcggatgtctggtgg ggcggagcag acacagacta tgcagatggg 660 agtgaagaca aagtagtagaagtagcagag gaggaagaag tggctgaggt ggaagaagaa 720 gaagccgatg atgacgaggacgatgaggat ggtgatgagg tagaggaaga ggctgaggaa 780 ccctacgaag aagccacagagagaaccacc agcattgcca ccaccaccac caccaccaca 840 gagtctgtgg aagaggtggttcgagaggtg tgctctgaac aagccgagac ggggccgtgc 900 cgagcaatga tctcccgctggtactttgat gtgactgaag ggaagtgtgc cccattcttt 960 tacggcggat gtggcggcaaccggaacaac tttgacacag aagagtactg catggccgtg 1020 tgtggcagcg ccatgtcccaaagtttactc aagactaccc aggaacctct tggccgagat 1080 cctgttaaac ttcctacaacagcagccagt acccctgatg ccgttgacaa gtatctcgag 1140 acacctgggg atgagaatgaacatgcccat ttccagaaag ccaaagagag gcttgaggcc 1200 aagcaccgag agagaatgtcccaggtcatg agagaatggg aagaggcaga acgtcaagca 1260 aagaacttgc ctaaagctgataagaaggca gttatccagc atttccagga gaaagtggaa 1320 tctttggaac aggaagcagccaacgagaga cagcagctgg tggagacaca catggccaga 1380 gtggaagcca tgctcaatgaccgccgccgc ctggccctgg agaactacat caccgctctg 1440 caggctgttc ctcctcggcctcgtcacgtg ttcaatatgc taaagaagta tgtccgcgca 1500 gaacagaagg acagacagcacaccctaaag catttcgagc atgtgcgcat ggtggatccc 1560 aagaaagccg ctcagatccggtcccaggtt atgacacacc tccgtgtgat ttatgagcgc 1620 atgaatcagt ctctctccctgctctacaac gtgcctgcag tggccgagga gattcaggat 1680 gaagttgatg agctgcttcagaaagagcaa aactattcag atgacgtctt ggccaacatg 1740 attagtgaac caaggatcagttacggaaac gatgctctca tgccatcttt gaccgaaacg 1800 aaaaccaccg tggagctccttcccgtgaat ggagagttca gcctggacga tctccagccg 1860 tggcattctt ttggggctgactctgtgcca gccaacacag aaaacgaagt tgagcctgtt 1920 gatgcccgcc ctgctgccgaccgaggactg accactcgac caggttctgg gttgacaaat 1980 atcaagacgg aggagatctctgaagtgaag atggatgcag aattccgaca tgactcagga 2040 tatgaagttc atcatcaaaaattggtgttc tttgcagaag atgtgggttc aaacaaaggt 2100 gcaatcattg gactcatggtgggcggtgtt gtcatagcga cagtgatcgt catcaccttg 2160 gtgatgctga agaagaaacagtacacatcc attcatcatg gtgtggtgga ggttgacgcc 2220 gctgtcaccc cagaggagcgccacctgtcc aagatgcagc agaacggcta cgaaaatcca 2280 acctacaagt tctttgagcagatgcagaac 2310 55 770 PRT Homo sapiens 55 Met Leu Pro Gly Leu Ala LeuLeu Leu Leu Ala Ala Trp Thr Ala Arg 1 5 10 15 Ala Leu Glu Val Pro ThrAsp Gly Asn Ala Gly Leu Leu Ala Glu Pro 20 25 30 Gln Ile Ala Met Phe CysGly Arg Leu Asn Met His Met Asn Val Gln 35 40 45 Asn Gly Lys Trp Asp SerAsp Pro Ser Gly Thr Lys Thr Cys Ile Asp 50 55 60 Thr Lys Glu Gly Ile LeuGln Tyr Cys Gln Glu Val Tyr Pro Glu Leu 65 70 75 80 Gln Ile Thr Asn ValVal Glu Ala Asn Gln Pro Val Thr Ile Gln Asn 85 90 95 Trp Cys Lys Arg GlyArg Lys Gln Cys Lys Thr His Pro His Phe Val 100 105 110 Ile Pro Tyr ArgCys Leu Val Gly Glu Phe Val Ser Asp Ala Leu Leu 115 120 125 Val Pro AspLys Cys Lys Phe Leu His Gln Glu Arg Met Asp Val Cys 130 135 140 Glu ThrHis Leu His Trp His Thr Val Ala Lys Glu Thr Cys Ser Glu 145 150 155 160Lys Ser Thr Asn Leu His Asp Tyr Gly Met Leu Leu Pro Cys Gly Ile 165 170175 Asp Lys Phe Arg Gly Val Glu Phe Val Cys Cys Pro Leu Ala Glu Glu 180185 190 Ser Asp Asn Val Asp Ser Ala Asp Ala Glu Glu Asp Asp Ser Asp Val195 200 205 Trp Trp Gly Gly Ala Asp Thr Asp Tyr Ala Asp Gly Ser Glu AspLys 210 215 220 Val Val Glu Val Ala Glu Glu Glu Glu Val Ala Glu Val GluGlu Glu 225 230 235 240 Glu Ala Asp Asp Asp Glu Asp Asp Glu Asp Gly AspGlu Val Glu Glu 245 250 255 Glu Ala Glu Glu Pro Tyr Glu Glu Ala Thr GluArg Thr Thr Ser Ile 260 265 270 Ala Thr Thr Thr Thr Thr Thr Thr Glu SerVal Glu Glu Val Val Arg 275 280 285 Glu Val Cys Ser Glu Gln Ala Glu ThrGly Pro Cys Arg Ala Met Ile 290 295 300 Ser Arg Trp Tyr Phe Asp Val ThrGlu Gly Lys Cys Ala Pro Phe Phe 305 310 315 320 Tyr Gly Gly Cys Gly GlyAsn Arg Asn Asn Phe Asp Thr Glu Glu Tyr 325 330 335 Cys Met Ala Val CysGly Ser Ala Met Ser Gln Ser Leu Leu Lys Thr 340 345 350 Thr Gln Glu ProLeu Ala Arg Asp Pro Val Lys Leu Pro Thr Thr Ala 355 360 365 Ala Ser ThrPro Asp Ala Val Asp Lys Tyr Leu Glu Thr Pro Gly Asp 370 375 380 Glu AsnGlu His Ala His Phe Gln Lys Ala Lys Glu Arg Leu Glu Ala 385 390 395 400Lys His Arg Glu Arg Met Ser Gln Val Met Arg Glu Trp Glu Glu Ala 405 410415 Glu Arg Gln Ala Lys Asn Leu Pro Lys Ala Asp Lys Lys Ala Val Ile 420425 430 Gln His Phe Gln Glu Lys Val Glu Ser Leu Glu Gln Glu Ala Ala Asn435 440 445 Glu Arg Gln Gln Leu Val Glu Thr His Met Ala Arg Val Glu AlaMet 450 455 460 Leu Asn Asp Arg Arg Arg Leu Ala Leu Glu Asn Tyr Ile ThrAla Leu 465 470 475 480 Gln Ala Val Pro Pro Arg Pro Arg His Val Phe AsnMet Leu Lys Lys 485 490 495 Tyr Val Arg Ala Glu Gln Lys Asp Arg Gln HisThr Leu Lys His Phe 500 505 510 Glu His Val Arg Met Val Asp Pro Lys LysAla Ala Gln Ile Arg Ser 515 520 525 Gln Val Met Thr His Leu Arg Val IleTyr Glu Arg Met Asn Gln Ser 530 535 540 Leu Ser Leu Leu Tyr Asn Val ProAla Val Ala Glu Glu Ile Gln Asp 545 550 555 560 Glu Val Asp Glu Leu LeuGln Lys Glu Gln Asn Tyr Ser Asp Asp Val 565 570 575 Leu Ala Asn Met IleSer Glu Pro Arg Ile Ser Tyr Gly Asn Asp Ala 580 585 590 Leu Met Pro SerLeu Thr Glu Thr Lys Thr Thr Val Glu Leu Leu Pro 595 600 605 Val Asn GlyGlu Phe Ser Leu Asp Asp Leu Gln Pro Trp His Ser Phe 610 615 620 Gly AlaAsp Ser Val Pro Ala Asn Thr Glu Asn Glu Val Glu Pro Val 625 630 635 640Asp Ala Arg Pro Ala Ala Asp Arg Gly Leu Thr Thr Arg Pro Gly Ser 645 650655 Gly Leu Thr Asn Ile Lys Thr Glu Glu Ile Ser Glu Val Lys Met Asp 660665 670 Ala Glu Phe Arg His Asp Ser Gly Tyr Glu Val His His Gln Lys Leu675 680 685 Val Phe Phe Ala Glu Asp Val Gly Ser Asn Lys Gly Ala Ile IleGly 690 695 700 Leu Met Val Gly Gly Val Val Ile Ala Thr Val Ile Val IleThr Leu 705 710 715 720 Val Met Leu Lys Lys Lys Gln Tyr Thr Ser Ile HisHis Gly Val Val 725 730 735 Glu Val Asp Ala Ala Val Thr Pro Glu Glu ArgHis Leu Ser Lys Met 740 745 750 Gln Gln Asn Gly Tyr Glu Asn Pro Thr TyrLys Phe Phe Glu Gln Met 755 760 765 Gln Asn 770 56 2253 DNA Homo sapiens56 atgctgcccg gtttggcact gctcctgctg gccgcctgga cggctcgggc gctggaggta 60cccactgatg gtaatgctgg cctgctggct gaaccccaga ttgccatgtt ctgtggcaga 120ctgaacatgc acatgaatgt ccagaatggg aagtgggatt cagatccatc agggaccaaa 180acctgcattg ataccaagga aggcatcctg cagtattgcc aagaagtcta ccctgaactg 240cagatcacca atgtggtaga agccaaccaa ccagtgacca tccagaactg gtgcaagcgg 300ggccgcaagc agtgcaagac ccatccccac tttgtgattc cctaccgctg cttagttggt 360gagtttgtaa gtgatgccct tctcgttcct gacaagtgca aattcttaca ccaggagagg 420atggatgttt gcgaaactca tcttcactgg cacaccgtcg ccaaagagac atgcagtgag 480aagagtacca acttgcatga ctacggcatg ttgctgccct gcggaattga caagttccga 540ggggtagagt ttgtgtgttg cccactggct gaagaaagtg acaatgtgga ttctgctgat 600gcggaggagg atgactcgga tgtctggtgg ggcggagcag acacagacta tgcagatggg 660agtgaagaca aagtagtaga agtagcagag gaggaagaag tggctgaggt ggaagaagaa 720gaagccgatg atgacgagga cgatgaggat ggtgatgagg tagaggaaga ggctgaggaa 780ccctacgaag aagccacaga gagaaccacc agcattgcca ccaccaccac caccaccaca 840gagtctgtgg aagaggtggt tcgagaggtg tgctctgaac aagccgagac ggggccgtgc 900cgagcaatga tctcccgctg gtactttgat gtgactgaag ggaagtgtgc cccattcttt 960tacggcggat gtggcggcaa ccggaacaac tttgacacag aagagtactg catggccgtg 1020tgtggcagcg ccattcctac aacagcagcc agtacccctg atgccgttga caagtatctc 1080gagacacctg gggatgagaa tgaacatgcc catttccaga aagccaaaga gaggcttgag 1140gccaagcacc gagagagaat gtcccaggtc atgagagaat gggaagaggc agaacgtcaa 1200gcaaagaact tgcctaaagc tgataagaag gcagttatcc agcatttcca ggagaaagtg 1260gaatctttgg aacaggaagc agccaacgag agacagcagc tggtggagac acacatggcc 1320agagtggaag ccatgctcaa tgaccgccgc cgcctggccc tggagaacta catcaccgct 1380ctgcaggctg ttcctcctcg gcctcgtcac gtgttcaata tgctaaagaa gtatgtccgc 1440gcagaacaga aggacagaca gcacacccta aagcatttcg agcatgtgcg catggtggat 1500cccaagaaag ccgctcagat ccggtcccag gttatgacac acctccgtgt gatttatgag 1560cgcatgaatc agtctctctc cctgctctac aacgtgcctg cagtggccga ggagattcag 1620gatgaagttg atgagctgct tcagaaagag caaaactatt cagatgacgt cttggccaac 1680atgattagtg aaccaaggat cagttacgga aacgatgctc tcatgccatc tttgaccgaa 1740acgaaaacca ccgtggagct ccttcccgtg aatggagagt tcagcctgga cgatctccag 1800ccgtggcatt cttttggggc tgactctgtg ccagccaaca cagaaaacga agttgagcct 1860gttgatgccc gccctgctgc cgaccgagga ctgaccactc gaccaggttc tgggttgaca 1920aatatcaaga cggaggagat ctctgaagtg aagatggatg cagaattccg acatgactca 1980ggatatgaag ttcatcatca aaaattggtg ttctttgcag aagatgtggg ttcaaacaaa 2040ggtgcaatca ttggactcat ggtgggcggt gttgtcatag cgacagtgat cgtcatcacc 2100ttggtgatgc tgaagaagaa acagtacaca tccattcatc atggtgtggt ggaggttgac 2160gccgctgtca ccccagagga gcgccacctg tccaagatgc agcagaacgg ctacgaaaat 2220ccaacctaca agttctttga gcagatgcag aac 2253 57 751 PRT Homo sapiens 57 MetLeu Pro Gly Leu Ala Leu Leu Leu Leu Ala Ala Trp Thr Ala Arg 1 5 10 15Ala Leu Glu Val Pro Thr Asp Gly Asn Ala Gly Leu Leu Ala Glu Pro 20 25 30Gln Ile Ala Met Phe Cys Gly Arg Leu Asn Met His Met Asn Val Gln 35 40 45Asn Gly Lys Trp Asp Ser Asp Pro Ser Gly Thr Lys Thr Cys Ile Asp 50 55 60Thr Lys Glu Gly Ile Leu Gln Tyr Cys Gln Glu Val Tyr Pro Glu Leu 65 70 7580 Gln Ile Thr Asn Val Val Glu Ala Asn Gln Pro Val Thr Ile Gln Asn 85 9095 Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys Thr His Pro His Phe Val 100105 110 Ile Pro Tyr Arg Cys Leu Val Gly Glu Phe Val Ser Asp Ala Leu Leu115 120 125 Val Pro Asp Lys Cys Lys Phe Leu His Gln Glu Arg Met Asp ValCys 130 135 140 Glu Thr His Leu His Trp His Thr Val Ala Lys Glu Thr CysSer Glu 145 150 155 160 Lys Ser Thr Asn Leu His Asp Tyr Gly Met Leu LeuPro Cys Gly Ile 165 170 175 Asp Lys Phe Arg Gly Val Glu Phe Val Cys CysPro Leu Ala Glu Glu 180 185 190 Ser Asp Asn Val Asp Ser Ala Asp Ala GluGlu Asp Asp Ser Asp Val 195 200 205 Trp Trp Gly Gly Ala Asp Thr Asp TyrAla Asp Gly Ser Glu Asp Lys 210 215 220 Val Val Glu Val Ala Glu Glu GluGlu Val Ala Glu Val Glu Glu Glu 225 230 235 240 Glu Ala Asp Asp Asp GluAsp Asp Glu Asp Gly Asp Glu Val Glu Glu 245 250 255 Glu Ala Glu Glu ProTyr Glu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260 265 270 Ala Thr Thr ThrThr Thr Thr Thr Glu Ser Val Glu Glu Val Val Arg 275 280 285 Glu Val CysSer Glu Gln Ala Glu Thr Gly Pro Cys Arg Ala Met Ile 290 295 300 Ser ArgTrp Tyr Phe Asp Val Thr Glu Gly Lys Cys Ala Pro Phe Phe 305 310 315 320Tyr Gly Gly Cys Gly Gly Asn Arg Asn Asn Phe Asp Thr Glu Glu Tyr 325 330335 Cys Met Ala Val Cys Gly Ser Ala Ile Pro Thr Thr Ala Ala Ser Thr 340345 350 Pro Asp Ala Val Asp Lys Tyr Leu Glu Thr Pro Gly Asp Glu Asn Glu355 360 365 His Ala His Phe Gln Lys Ala Lys Glu Arg Leu Glu Ala Lys HisArg 370 375 380 Glu Arg Met Ser Gln Val Met Arg Glu Trp Glu Glu Ala GluArg Gln 385 390 395 400 Ala Lys Asn Leu Pro Lys Ala Asp Lys Lys Ala ValIle Gln His Phe 405 410 415 Gln Glu Lys Val Glu Ser Leu Glu Gln Glu AlaAla Asn Glu Arg Gln 420 425 430 Gln Leu Val Glu Thr His Met Ala Arg ValGlu Ala Met Leu Asn Asp 435 440 445 Arg Arg Arg Leu Ala Leu Glu Asn TyrIle Thr Ala Leu Gln Ala Val 450 455 460 Pro Pro Arg Pro Arg His Val PheAsn Met Leu Lys Lys Tyr Val Arg 465 470 475 480 Ala Glu Gln Lys Asp ArgGln His Thr Leu Lys His Phe Glu His Val 485 490 495 Arg Met Val Asp ProLys Lys Ala Ala Gln Ile Arg Ser Gln Val Met 500 505 510 Thr His Leu ArgVal Ile Tyr Glu Arg Met Asn Gln Ser Leu Ser Leu 515 520 525 Leu Tyr AsnVal Pro Ala Val Ala Glu Glu Ile Gln Asp Glu Val Asp 530 535 540 Glu LeuLeu Gln Lys Glu Gln Asn Tyr Ser Asp Asp Val Leu Ala Asn 545 550 555 560Met Ile Ser Glu Pro Arg Ile Ser Tyr Gly Asn Asp Ala Leu Met Pro 565 570575 Ser Leu Thr Glu Thr Lys Thr Thr Val Glu Leu Leu Pro Val Asn Gly 580585 590 Glu Phe Ser Leu Asp Asp Leu Gln Pro Trp His Ser Phe Gly Ala Asp595 600 605 Ser Val Pro Ala Asn Thr Glu Asn Glu Val Glu Pro Val Asp AlaArg 610 615 620 Pro Ala Ala Asp Arg Gly Leu Thr Thr Arg Pro Gly Ser GlyLeu Thr 625 630 635 640 Asn Ile Lys Thr Glu Glu Ile Ser Glu Val Lys MetAsp Ala Glu Phe 645 650 655 Arg His Asp Ser Gly Tyr Glu Val His His GlnLys Leu Val Phe Phe 660 665 670 Ala Glu Asp Val Gly Ser Asn Lys Gly AlaIle Ile Gly Leu Met Val 675 680 685 Gly Gly Val Val Ile Ala Thr Val IleVal Ile Thr Leu Val Met Leu 690 695 700 Lys Lys Lys Gln Tyr Thr Ser IleHis His Gly Val Val Glu Val Asp 705 710 715 720 Ala Ala Val Thr Pro GluGlu Arg His Leu Ser Lys Met Gln Gln Asn 725 730 735 Gly Tyr Glu Asn ProThr Tyr Lys Phe Phe Glu Gln Met Gln Asn 740 745 750 58 2316 DNA Homosapiens 58 atgctgcccg gtttggcact gctcctgctg gccgcctgga cggctcgggcgctggaggta 60 cccactgatg gtaatgctgg cctgctggct gaaccccaga ttgccatgttctgtggcaga 120 ctgaacatgc acatgaatgt ccagaatggg aagtgggatt cagatccatcagggaccaaa 180 acctgcattg ataccaagga aggcatcctg cagtattgcc aagaagtctaccctgaactg 240 cagatcacca atgtggtaga agccaaccaa ccagtgacca tccagaactggtgcaagcgg 300 ggccgcaagc agtgcaagac ccatccccac tttgtgattc cctaccgctgcttagttggt 360 gagtttgtaa gtgatgccct tctcgttcct gacaagtgca aattcttacaccaggagagg 420 atggatgttt gcgaaactca tcttcactgg cacaccgtcg ccaaagagacatgcagtgag 480 aagagtacca acttgcatga ctacggcatg ttgctgccct gcggaattgacaagttccga 540 ggggtagagt ttgtgtgttg cccactggct gaagaaagtg acaatgtggattctgctgat 600 gcggaggagg atgactcgga tgtctggtgg ggcggagcag acacagactatgcagatggg 660 agtgaagaca aagtagtaga agtagcagag gaggaagaag tggctgaggtggaagaagaa 720 gaagccgatg atgacgagga cgatgaggat ggtgatgagg tagaggaagaggctgaggaa 780 ccctacgaag aagccacaga gagaaccacc agcattgcca ccaccaccaccaccaccaca 840 gagtctgtgg aagaggtggt tcgagaggtg tgctctgaac aagccgagacggggccgtgc 900 cgagcaatga tctcccgctg gtactttgat gtgactgaag ggaagtgtgccccattcttt 960 tacggcggat gtggcggcaa ccggaacaac tttgacacag aagagtactgcatggccgtg 1020 tgtggcagcg ccatgtccca aagtttactc aagactaccc aggaacctcttggccgagat 1080 cctgttaaac ttcctacaac agcagccagt acccctgatg ccgttgacaagtatctcgag 1140 acacctgggg atgagaatga acatgcccat ttccagaaag ccaaagagaggcttgaggcc 1200 aagcaccgag agagaatgtc ccaggtcatg agagaatggg aagaggcagaacgtcaagca 1260 aagaacttgc ctaaagctga taagaaggca gttatccagc atttccaggagaaagtggaa 1320 tctttggaac aggaagcagc caacgagaga cagcagctgg tggagacacacatggccaga 1380 gtggaagcca tgctcaatga ccgccgccgc ctggccctgg agaactacatcaccgctctg 1440 caggctgttc ctcctcggcc tcgtcacgtg ttcaatatgc taaagaagtatgtccgcgca 1500 gaacagaagg acagacagca caccctaaag catttcgagc atgtgcgcatggtggatccc 1560 aagaaagccg ctcagatccg gtcccaggtt atgacacacc tccgtgtgatttatgagcgc 1620 atgaatcagt ctctctccct gctctacaac gtgcctgcag tggccgaggagattcaggat 1680 gaagttgatg agctgcttca gaaagagcaa aactattcag atgacgtcttggccaacatg 1740 attagtgaac caaggatcag ttacggaaac gatgctctca tgccatctttgaccgaaacg 1800 aaaaccaccg tggagctcct tcccgtgaat ggagagttca gcctggacgatctccagccg 1860 tggcattctt ttggggctga ctctgtgcca gccaacacag aaaacgaagttgagcctgtt 1920 gatgcccgcc ctgctgccga ccgaggactg accactcgac caggttctgggttgacaaat 1980 atcaagacgg aggagatctc tgaagtgaag atggatgcag aattccgacatgactcagga 2040 tatgaagttc atcatcaaaa attggtgttc tttgcagaag atgtgggttcaaacaaaggt 2100 gcaatcattg gactcatggt gggcggtgtt gtcatagcga cagtgatcgtcatcaccttg 2160 gtgatgctga agaagaaaca gtacacatcc attcatcatg gtgtggtggaggttgacgcc 2220 gctgtcaccc cagaggagcg ccacctgtcc aagatgcagc agaacggctacgaaaatcca 2280 acctacaagt tctttgagca gatgcagaac aagaag 2316 59 772 PRTHomo sapiens 59 Met Leu Pro Gly Leu Ala Leu Leu Leu Leu Ala Ala Trp ThrAla Arg 1 5 10 15 Ala Leu Glu Val Pro Thr Asp Gly Asn Ala Gly Leu LeuAla Glu Pro 20 25 30 Gln Ile Ala Met Phe Cys Gly Arg Leu Asn Met His MetAsn Val Gln 35 40 45 Asn Gly Lys Trp Asp Ser Asp Pro Ser Gly Thr Lys ThrCys Ile Asp 50 55 60 Thr Lys Glu Gly Ile Leu Gln Tyr Cys Gln Glu Val TyrPro Glu Leu 65 70 75 80 Gln Ile Thr Asn Val Val Glu Ala Asn Gln Pro ValThr Ile Gln Asn 85 90 95 Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys Thr HisPro His Phe Val 100 105 110 Ile Pro Tyr Arg Cys Leu Val Gly Glu Phe ValSer Asp Ala Leu Leu 115 120 125 Val Pro Asp Lys Cys Lys Phe Leu His GlnGlu Arg Met Asp Val Cys 130 135 140 Glu Thr His Leu His Trp His Thr ValAla Lys Glu Thr Cys Ser Glu 145 150 155 160 Lys Ser Thr Asn Leu His AspTyr Gly Met Leu Leu Pro Cys Gly Ile 165 170 175 Asp Lys Phe Arg Gly ValGlu Phe Val Cys Cys Pro Leu Ala Glu Glu 180 185 190 Ser Asp Asn Val AspSer Ala Asp Ala Glu Glu Asp Asp Ser Asp Val 195 200 205 Trp Trp Gly GlyAla Asp Thr Asp Tyr Ala Asp Gly Ser Glu Asp Lys 210 215 220 Val Val GluVal Ala Glu Glu Glu Glu Val Ala Glu Val Glu Glu Glu 225 230 235 240 GluAla Asp Asp Asp Glu Asp Asp Glu Asp Gly Asp Glu Val Glu Glu 245 250 255Glu Ala Glu Glu Pro Tyr Glu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260 265270 Ala Thr Thr Thr Thr Thr Thr Thr Glu Ser Val Glu Glu Val Val Arg 275280 285 Glu Val Cys Ser Glu Gln Ala Glu Thr Gly Pro Cys Arg Ala Met Ile290 295 300 Ser Arg Trp Tyr Phe Asp Val Thr Glu Gly Lys Cys Ala Pro PhePhe 305 310 315 320 Tyr Gly Gly Cys Gly Gly Asn Arg Asn Asn Phe Asp ThrGlu Glu Tyr 325 330 335 Cys Met Ala Val Cys Gly Ser Ala Met Ser Gln SerLeu Leu Lys Thr 340 345 350 Thr Gln Glu Pro Leu Ala Arg Asp Pro Val LysLeu Pro Thr Thr Ala 355 360 365 Ala Ser Thr Pro Asp Ala Val Asp Lys TyrLeu Glu Thr Pro Gly Asp 370 375 380 Glu Asn Glu His Ala His Phe Gln LysAla Lys Glu Arg Leu Glu Ala 385 390 395 400 Lys His Arg Glu Arg Met SerGln Val Met Arg Glu Trp Glu Glu Ala 405 410 415 Glu Arg Gln Ala Lys AsnLeu Pro Lys Ala Asp Lys Lys Ala Val Ile 420 425 430 Gln His Phe Gln GluLys Val Glu Ser Leu Glu Gln Glu Ala Ala Asn 435 440 445 Glu Arg Gln GlnLeu Val Glu Thr His Met Ala Arg Val Glu Ala Met 450 455 460 Leu Asn AspArg Arg Arg Leu Ala Leu Glu Asn Tyr Ile Thr Ala Leu 465 470 475 480 GlnAla Val Pro Pro Arg Pro Arg His Val Phe Asn Met Leu Lys Lys 485 490 495Tyr Val Arg Ala Glu Gln Lys Asp Arg Gln His Thr Leu Lys His Phe 500 505510 Glu His Val Arg Met Val Asp Pro Lys Lys Ala Ala Gln Ile Arg Ser 515520 525 Gln Val Met Thr His Leu Arg Val Ile Tyr Glu Arg Met Asn Gln Ser530 535 540 Leu Ser Leu Leu Tyr Asn Val Pro Ala Val Ala Glu Glu Ile GlnAsp 545 550 555 560 Glu Val Asp Glu Leu Leu Gln Lys Glu Gln Asn Tyr SerAsp Asp Val 565 570 575 Leu Ala Asn Met Ile Ser Glu Pro Arg Ile Ser TyrGly Asn Asp Ala 580 585 590 Leu Met Pro Ser Leu Thr Glu Thr Lys Thr ThrVal Glu Leu Leu Pro 595 600 605 Val Asn Gly Glu Phe Ser Leu Asp Asp LeuGln Pro Trp His Ser Phe 610 615 620 Gly Ala Asp Ser Val Pro Ala Asn ThrGlu Asn Glu Val Glu Pro Val 625 630 635 640 Asp Ala Arg Pro Ala Ala AspArg Gly Leu Thr Thr Arg Pro Gly Ser 645 650 655 Gly Leu Thr Asn Ile LysThr Glu Glu Ile Ser Glu Val Lys Met Asp 660 665 670 Ala Glu Phe Arg HisAsp Ser Gly Tyr Glu Val His His Gln Lys Leu 675 680 685 Val Phe Phe AlaGlu Asp Val Gly Ser Asn Lys Gly Ala Ile Ile Gly 690 695 700 Leu Met ValGly Gly Val Val Ile Ala Thr Val Ile Val Ile Thr Leu 705 710 715 720 ValMet Leu Lys Lys Lys Gln Tyr Thr Ser Ile His His Gly Val Val 725 730 735Glu Val Asp Ala Ala Val Thr Pro Glu Glu Arg His Leu Ser Lys Met 740 745750 Gln Gln Asn Gly Tyr Glu Asn Pro Thr Tyr Lys Phe Phe Glu Gln Met 755760 765 Gln Asn Lys Lys 770 60 2259 DNA Homo sapiens 60 atgctgcccggtttggcact gctcctgctg gccgcctgga cggctcgggc gctggaggta 60 cccactgatggtaatgctgg cctgctggct gaaccccaga ttgccatgtt ctgtggcaga 120 ctgaacatgcacatgaatgt ccagaatggg aagtgggatt cagatccatc agggaccaaa 180 acctgcattgataccaagga aggcatcctg cagtattgcc aagaagtcta ccctgaactg 240 cagatcaccaatgtggtaga agccaaccaa ccagtgacca tccagaactg gtgcaagcgg 300 ggccgcaagcagtgcaagac ccatccccac tttgtgattc cctaccgctg cttagttggt 360 gagtttgtaagtgatgccct tctcgttcct gacaagtgca aattcttaca ccaggagagg 420 atggatgtttgcgaaactca tcttcactgg cacaccgtcg ccaaagagac atgcagtgag 480 aagagtaccaacttgcatga ctacggcatg ttgctgccct gcggaattga caagttccga 540 ggggtagagtttgtgtgttg cccactggct gaagaaagtg acaatgtgga ttctgctgat 600 gcggaggaggatgactcgga tgtctggtgg ggcggagcag acacagacta tgcagatggg 660 agtgaagacaaagtagtaga agtagcagag gaggaagaag tggctgaggt ggaagaagaa 720 gaagccgatgatgacgagga cgatgaggat ggtgatgagg tagaggaaga ggctgaggaa 780 ccctacgaagaagccacaga gagaaccacc agcattgcca ccaccaccac caccaccaca 840 gagtctgtggaagaggtggt tcgagaggtg tgctctgaac aagccgagac ggggccgtgc 900 cgagcaatgatctcccgctg gtactttgat gtgactgaag ggaagtgtgc cccattcttt 960 tacggcggatgtggcggcaa ccggaacaac tttgacacag aagagtactg catggccgtg 1020 tgtggcagcgccattcctac aacagcagcc agtacccctg atgccgttga caagtatctc 1080 gagacacctggggatgagaa tgaacatgcc catttccaga aagccaaaga gaggcttgag 1140 gccaagcaccgagagagaat gtcccaggtc atgagagaat gggaagaggc agaacgtcaa 1200 gcaaagaacttgcctaaagc tgataagaag gcagttatcc agcatttcca ggagaaagtg 1260 gaatctttggaacaggaagc agccaacgag agacagcagc tggtggagac acacatggcc 1320 agagtggaagccatgctcaa tgaccgccgc cgcctggccc tggagaacta catcaccgct 1380 ctgcaggctgttcctcctcg gcctcgtcac gtgttcaata tgctaaagaa gtatgtccgc 1440 gcagaacagaaggacagaca gcacacccta aagcatttcg agcatgtgcg catggtggat 1500 cccaagaaagccgctcagat ccggtcccag gttatgacac acctccgtgt gatttatgag 1560 cgcatgaatcagtctctctc cctgctctac aacgtgcctg cagtggccga ggagattcag 1620 gatgaagttgatgagctgct tcagaaagag caaaactatt cagatgacgt cttggccaac 1680 atgattagtgaaccaaggat cagttacgga aacgatgctc tcatgccatc tttgaccgaa 1740 acgaaaaccaccgtggagct ccttcccgtg aatggagagt tcagcctgga cgatctccag 1800 ccgtggcattcttttggggc tgactctgtg ccagccaaca cagaaaacga agttgagcct 1860 gttgatgcccgccctgctgc cgaccgagga ctgaccactc gaccaggttc tgggttgaca 1920 aatatcaagacggaggagat ctctgaagtg aagatggatg cagaattccg acatgactca 1980 ggatatgaagttcatcatca aaaattggtg ttctttgcag aagatgtggg ttcaaacaaa 2040 ggtgcaatcattggactcat ggtgggcggt gttgtcatag cgacagtgat cgtcatcacc 2100 ttggtgatgctgaagaagaa acagtacaca tccattcatc atggtgtggt ggaggttgac 2160 gccgctgtcaccccagagga gcgccacctg tccaagatgc agcagaacgg ctacgaaaat 2220 ccaacctacaagttctttga gcagatgcag aacaagaag 2259 61 753 PRT Homo sapiens 61 Met LeuPro Gly Leu Ala Leu Leu Leu Leu Ala Ala Trp Thr Ala Arg 1 5 10 15 AlaLeu Glu Val Pro Thr Asp Gly Asn Ala Gly Leu Leu Ala Glu Pro 20 25 30 GlnIle Ala Met Phe Cys Gly Arg Leu Asn Met His Met Asn Val Gln 35 40 45 AsnGly Lys Trp Asp Ser Asp Pro Ser Gly Thr Lys Thr Cys Ile Asp 50 55 60 ThrLys Glu Gly Ile Leu Gln Tyr Cys Gln Glu Val Tyr Pro Glu Leu 65 70 75 80Gln Ile Thr Asn Val Val Glu Ala Asn Gln Pro Val Thr Ile Gln Asn 85 90 95Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys Thr His Pro His Phe Val 100 105110 Ile Pro Tyr Arg Cys Leu Val Gly Glu Phe Val Ser Asp Ala Leu Leu 115120 125 Val Pro Asp Lys Cys Lys Phe Leu His Gln Glu Arg Met Asp Val Cys130 135 140 Glu Thr His Leu His Trp His Thr Val Ala Lys Glu Thr Cys SerGlu 145 150 155 160 Lys Ser Thr Asn Leu His Asp Tyr Gly Met Leu Leu ProCys Gly Ile 165 170 175 Asp Lys Phe Arg Gly Val Glu Phe Val Cys Cys ProLeu Ala Glu Glu 180 185 190 Ser Asp Asn Val Asp Ser Ala Asp Ala Glu GluAsp Asp Ser Asp Val 195 200 205 Trp Trp Gly Gly Ala Asp Thr Asp Tyr AlaAsp Gly Ser Glu Asp Lys 210 215 220 Val Val Glu Val Ala Glu Glu Glu GluVal Ala Glu Val Glu Glu Glu 225 230 235 240 Glu Ala Asp Asp Asp Glu AspAsp Glu Asp Gly Asp Glu Val Glu Glu 245 250 255 Glu Ala Glu Glu Pro TyrGlu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260 265 270 Ala Thr Thr Thr ThrThr Thr Thr Glu Ser Val Glu Glu Val Val Arg 275 280 285 Glu Val Cys SerGlu Gln Ala Glu Thr Gly Pro Cys Arg Ala Met Ile 290 295 300 Ser Arg TrpTyr Phe Asp Val Thr Glu Gly Lys Cys Ala Pro Phe Phe 305 310 315 320 TyrGly Gly Cys Gly Gly Asn Arg Asn Asn Phe Asp Thr Glu Glu Tyr 325 330 335Cys Met Ala Val Cys Gly Ser Ala Ile Pro Thr Thr Ala Ala Ser Thr 340 345350 Pro Asp Ala Val Asp Lys Tyr Leu Glu Thr Pro Gly Asp Glu Asn Glu 355360 365 His Ala His Phe Gln Lys Ala Lys Glu Arg Leu Glu Ala Lys His Arg370 375 380 Glu Arg Met Ser Gln Val Met Arg Glu Trp Glu Glu Ala Glu ArgGln 385 390 395 400 Ala Lys Asn Leu Pro Lys Ala Asp Lys Lys Ala Val IleGln His Phe 405 410 415 Gln Glu Lys Val Glu Ser Leu Glu Gln Glu Ala AlaAsn Glu Arg Gln 420 425 430 Gln Leu Val Glu Thr His Met Ala Arg Val GluAla Met Leu Asn Asp 435 440 445 Arg Arg Arg Leu Ala Leu Glu Asn Tyr IleThr Ala Leu Gln Ala Val 450 455 460 Pro Pro Arg Pro Arg His Val Phe AsnMet Leu Lys Lys Tyr Val Arg 465 470 475 480 Ala Glu Gln Lys Asp Arg GlnHis Thr Leu Lys His Phe Glu His Val 485 490 495 Arg Met Val Asp Pro LysLys Ala Ala Gln Ile Arg Ser Gln Val Met 500 505 510 Thr His Leu Arg ValIle Tyr Glu Arg Met Asn Gln Ser Leu Ser Leu 515 520 525 Leu Tyr Asn ValPro Ala Val Ala Glu Glu Ile Gln Asp Glu Val Asp 530 535 540 Glu Leu LeuGln Lys Glu Gln Asn Tyr Ser Asp Asp Val Leu Ala Asn 545 550 555 560 MetIle Ser Glu Pro Arg Ile Ser Tyr Gly Asn Asp Ala Leu Met Pro 565 570 575Ser Leu Thr Glu Thr Lys Thr Thr Val Glu Leu Leu Pro Val Asn Gly 580 585590 Glu Phe Ser Leu Asp Asp Leu Gln Pro Trp His Ser Phe Gly Ala Asp 595600 605 Ser Val Pro Ala Asn Thr Glu Asn Glu Val Glu Pro Val Asp Ala Arg610 615 620 Pro Ala Ala Asp Arg Gly Leu Thr Thr Arg Pro Gly Ser Gly LeuThr 625 630 635 640 Asn Ile Lys Thr Glu Glu Ile Ser Glu Val Lys Met AspAla Glu Phe 645 650 655 Arg His Asp Ser Gly Tyr Glu Val His His Gln LysLeu Val Phe Phe 660 665 670 Ala Glu Asp Val Gly Ser Asn Lys Gly Ala IleIle Gly Leu Met Val 675 680 685 Gly Gly Val Val Ile Ala Thr Val Ile ValIle Thr Leu Val Met Leu 690 695 700 Lys Lys Lys Gln Tyr Thr Ser Ile HisHis Gly Val Val Glu Val Asp 705 710 715 720 Ala Ala Val Thr Pro Glu GluArg His Leu Ser Lys Met Gln Gln Asn 725 730 735 Gly Tyr Glu Asn Pro ThrTyr Lys Phe Phe Glu Gln Met Gln Asn Lys 740 745 750 Lys 62 8 PRTArtificial sequence Synthetic peptide 62 Leu Glu Val Leu Phe Gln Gly Pro1 5 63 10 PRT Artificial sequence Synthetic peptide 63 Ser Glu Val AsnLeu Asp Ala Glu Phe Arg 1 5 10 64 10 PRT Artificial sequence Syntheticpeptide 64 Ser Glu Val Lys Met Asp Ala Glu Phe Arg 1 5 10 65 15 PRTArtificial sequence Synthetic peptide 65 Arg Arg Gly Gly Val Val Ile AlaThr Val Ile Val Gly Glu Arg 1 5 10 15 66 4 PRT Artificial sequenceSynthetic peptide 66 Asn Leu Asp Ala 1 67 8 PRT Artificial sequenceSynthetic peptide 67 Glu Val Lys Met Asp Ala Glu Phe 1 5 68 5 PRTArtificial sequence Synthetic peptide 68 Gly Arg Arg Gly Ser 1 5 69 6PRT Artificial sequence Synthetic peptide 69 Thr Gln His Gly Ile Arg 1 570 6 PRT Artificial sequence Synthetic peptide 70 Glu Thr Asp Glu GluPro 1 5 71 15 PRT Artificial sequence Synthetic peptide 71 Met Cys AlaGlu Val Lys Met Asp Ala Glu Phe Lys Asp Asn Pro 1 5 10 15 72 5 PRTArtificial Sequence Description of Artificial Sequence synthetic peptide72 Asp Ala Glu Phe Arg 1 5 73 5 PRT Artificial Sequence Description ofArtificial Sequence synthetic peptide 73 Ser Glu Val Asn Leu 1 5 74 4PRT Artificial sequence Synthesized Peptide 74 Xaa Xaa Xaa Xaa 1

What is claimed is:
 1. A purified or isolated polynucleotide comprisinga nucleotide sequence that hybridizes under the following stringenthybridization conditions to the complement of SEQ ID NO: 3 or SEQ ID NO:5: (1) hybridization at 42° C. in a hybridization buffer comprising6×SSC and 0.1% SDS, and (2) washing at 65° C. in a wash solutioncomprising 1×SSC and 0.1% SDS; wherein the polynucleotide encodes apolypeptide that comprises an amino acid sequence selected from thegroup consisting of: (a) the amino acid sequence set forth in SEQ ID NO:4; (b) the amino acid sequence set forth in SEQ ID NO: 6; (c) fragmentsof (a) or (b) that include the aspartyl protease active site tripeptidesDTG and DSG and exhibit aspartyl protease activity involved inprocessing APP into amyloid beta, and (d) sequence variants of (a), (b)or (c), wherein substitution differences between the amino acid sequenceof the polypeptide and the amino acid sequence of (a) or (b) consist ofconservative substitutions, and wherein the polypeptide exhibitsaspartyl protease activity involved in processing APP into amyloid beta.2. A purified or isolated polynucleotide according to claim 1, whereinthe polypeptide encoded by the polynucleotide further comprises a signalpeptide.
 3. A purified or isolated polynucleotide according to claim 1,wherein the polypeptide encoded by the polynucleotide further comprisesa heterologous tag.
 4. A host cell transformed or transfected with apolynucleotide according to any one of claims 1-3.
 5. A vectorcomprising a polynucleotide according to any one of claims 1-3. 6 Anexpression vector comprising a polynucleotide according to any one ofclaims 1-3 operably linked to a heterologous expression controlsequence.
 7. A host cell transformed or transfected with an expressionvector according to claim
 6. 8. A host cell according to claim 7 that isa mammalian cell.
 9. A method of making an aspartyl proteasepolypeptide, comprising steps of growing a host cell according to claim8 in a growth media under conditions where the cell expresses thepolypeptide encoded by the polynucleotide.
 10. A method according toclaim 9, further comprising isolating or purifying the polypeptide fromthe cell or from the growth media.
 11. A method for identifying an agentthat decreases the protease activity of an aspartyl proteasepolypeptide, comprising steps of: (a) expressing an aspartyl proteasepolypeptide by growing a host cell of claim 4 under conditions whereinthe cell expresses the polypeptide encoded by the polynucleotide, (b)measuring proteolytic-activity of said polypeptide in the presence andabsence of a test agent; and (c) comparing proteolytic activity of thepolypeptide in the presence and absence of the test agent, whereindecreased proteolytic activity in the presence of the test agentidentifies the test agent as an agent that decreases the proteaseactivity of the aspartyl protease polypeptide.
 12. A method foridentifying an agent that decreases the protease activity of an aspartylprotease polypeptide, comprising steps of: (a) growing a host celltransformed or transfected with a polynucleotide in the presence andabsence of a test agent; under conditions wherein the cell expresses thepolypeptide encoded by the polynucleotide, wherein the polynucleotideencodes an aspartyl protease polypeptide comprising the amino acidsequence set forth in SEQ ID NO: 4 or SEQ ID NO: 6 or a continuousfragment thereof that retains the aspartyl protease activity toward APP,wherein said fragment includes aspartyl protease active site tripeptidesDTG and DSG, and (b) measuring proteolytic activity of the aspartylprotease polypeptide in the presence and absence of a test agent, and(c) comparing proteolytic activity of the aspartyl protease polypeptideexpressed by the cell in the presence and absence of the test agent,wherein decreased proteolytic activity in the presence of the test agentidentifies the test agent as an agent that decreases the proteaseactivity of the aspartyl protease polypeptide.
 13. A method according toclaim 11 or 12 wherein step (b) comprises measuring the proteolyticactivity of the polypeptide toward an amyloid precursor protein (APP)substrate.
 14. A method according to claim 13, wherein the APP substratecomprises an amyloid beta (A-beta) processing site.
 15. A methodaccording to claim 14, wherein the APP substrate comprises the Swedishmutation (K→N, M→L).
 16. A method according to claim 14, wherein the APPsubstrate is a peptide comprising a β-secretase cleavage site thatcomprises the formula P2-P1-P1′-P2′ (SEQ ID NO: 74), wherein P2 is anamino acid selected from K and N; P1 is an amino acid selected from Mand L; P1′ is the amino acid D; and P2′ is the amino acid A.
 17. Apurified or isolated polypeptide encoded by the polynucleotide of anyone of claims 1-3.